C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: armadillo repeat containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140691 ARMC5 9606 + 16:31458080-31467166 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268314 ARMC5-201 31458996-31467164 protein_coding
  ENST00000408912 ARMC5-001 31458080-31467105 protein_coding
  ENST00000457010 ARMC5-002 31458824-31467166 protein_coding
  ENST00000538189 ARMC5-202 31459087-31467164 protein_coding
  ENST00000563544 ARMC5-003 31458852-31467084 protein_coding
  ENST00000564514 ARMC5-006 31459994-31462323 nonsense_mediated_decay
  ENST00000564900 ARMC5-004 31459961-31467165 protein_coding
  ENST00000570119 ARMC5-007 31465333-31466151 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268314ENST00000408912ENST00000457010ENST00000538189ENST00000563544ENST00000564514ENST00000564900
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268314 2.543±0.00 0.934±0.17 1.816±0.00 0.711±0.40 N/A N/A N/A N/A 0.884±0.00 3.592±3.38 1.138±0.00 1.758±0.02
ENST00000408912 2.635±0.00 1.551±0.00 N/A N/A 0.764±0.00 N/A 1.097±0.00 1.985±0.00 2.720±0.79 1.162±0.00 1.009±0.18 N/A
ENST00000457010 1.846±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.863±0.30 N/A 1.029±0.00
ENST00000538189 N/A 1.392±0.00 N/A 1.331±0.00 N/A 1.241±0.00 N/A 0.181±0.00 N/A 2.023±0.09 2.144±0.00 3.485±0.00
ENST00000563544 N/A N/A N/A N/A N/A N/A 0.921±0.00 N/A 1.010±0.00 N/A 1.095±0.20 1.824±0.00
ENST00000564514 N/A N/A N/A N/A N/A N/A N/A N/A 1.755±0.00 N/A N/A N/A
ENST00000564900 3.797±0.00 3.873±0.60 1.821±0.00 N/A 1.354±0.00 5.875±0.00 3.301±0.00 N/A N/A 3.052±1.49 3.464±0.59 2.414±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090H CIL_00090H_0001 VISTA 16:31421736-32023283
CIL_00035P CIL_00035P_0001 CGP 16:31458080-31477960

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078083 armc5 armadillo repeat containing 5 protein_coding Danio_rerio
ENSMUSG00000042178 Armc5 armadillo repeat containing 5 protein_coding Mus_musculus

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