C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: microtubule-associated protein 1 light chain 3 beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140941 MAP1LC3B 9606 + 16:87383995-87404779 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268607 MAP1LC3B-001 87391800-87404779 protein_coding
  ENST00000561823 MAP1LC3B-007 87383995-87391740 processed_transcript
  ENST00000562778 MAP1LC3B-006 87384056-87391853 processed_transcript
  ENST00000563720 MAP1LC3B-008 87389770-87391738 processed_transcript
  ENST00000564638 MAP1LC3B-004 87392423-87399504 retained_intron
  ENST00000564844 MAP1LC3B-003 87392344-87404779 nonsense_mediated_decay
  ENST00000565788 MAP1LC3B-005 87392334-87402609 protein_coding
  ENST00000570189 MAP1LC3B-002 87392317-87403778 nonsense_mediated_decay
  ENST00000599768 MAP1LC3B-009 87389761-87391738 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268607ENST00000564844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268607 64.906±0.00 20.340±0.00 1.072±0.00 40.523±22.60 15.737±8.49 29.270±0.00 23.899±21.78 15.678±12.92 8.056±1.67 28.048±20.83 25.224±22.54 14.885±8.76 35.272±5.57 25.822±3.41
ENST00000564844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WG CIL_0008WG_0001 VISTA 16:87215497-87815964

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005776 ISS autophagic vacuole
GO:0005874 IEA microtubule
GO:0005930 ISS axoneme
GO:0006914 IEA autophagy
GO:0031090 ISS organelle membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020048 map1lc3b microtubule-associated protein 1 light chain 3 beta protein_coding Danio_rerio

Loading