Notice (8): Undefined index: CIL_0008WG_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000103264' => 'F-box protein 31',
'ENSG00000104731' => 'kelch domain containing 4',
'ENSG00000131152' => null,
'ENSG00000140941' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSG00000140948' => 'zinc finger, CCHC domain containing 14',
'ENSG00000154118' => 'junctophilin 3',
'ENSG00000226180' => null,
'ENSG00000243705' => null,
'ENSG00000260177' => null,
'ENSG00000260456' => 'chromosome 16 open reading frame 95',
'ENSG00000260498' => null,
'ENSG00000260671' => null,
'ENSG00000260750' => null,
'ENSG00000261095' => null,
'ENSG00000261592' => null,
'ENSG00000261651' => null,
'ENSG00000261697' => null,
'ENSG00000269901' => null,
'ENSG00000269935' => null,
'ENSG00000270006' => null,
'ENSG00000270082' => null,
'ENSG00000276337' => null,
'ENSG00000276393' => null,
'ENSG00000277504' => null,
'ENSG00000280419' => null,
'ENSMUSG00000025316' => 'BTG3 associated nuclear protein',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000025318' => 'junctophilin 3',
'ENSMUSG00000031809' => 'RIKEN cDNA 1700018B08 gene',
'ENSMUSG00000031812' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000040263' => 'kelch domain containing 4',
'ENSMUSG00000052934' => 'F-box protein 31',
'ENSMUSG00000061410' => 'zinc finger, CCHC domain containing 14',
'ENSMUSG00000064642' => 'predicted gene, 23299',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000077421' => 'predicted gene, 24283',
'ENSMUSG00000092418' => 'predicted gene 20406',
'ENSMUSG00000097424' => 'RIKEN cDNA 1700030M09 gene',
'ENSMUSG00000097438' => 'predicted gene, 26784',
'ENSMUSG00000097783' => 'predicted gene, 26747',
'ENSMUSG00000097812' => 'predicted gene, 26812',
'ENSMUSG00000097969' => 'predicted gene, 26999',
'ENSMUSG00000097987' => 'predicted gene, 17786',
'ENSMUSG00000098109' => 'RIKEN cDNA 9530085P06 gene',
'ENSMUSG00000098184' => 'predicted gene, 27011',
'ENSMUSG00000098211' => 'predicted gene, 27045',
'ENSMUSG00000098221' => 'predicted gene, 27030'
),
'gene_name_arr' => array(
'ENSG00000103264' => 'FBXO31',
'ENSG00000104731' => 'KLHDC4',
'ENSG00000131152' => 'RP11-178L8.4',
'ENSG00000140941' => 'MAP1LC3B',
'ENSG00000140948' => 'ZCCHC14',
'ENSG00000154118' => 'JPH3',
'ENSG00000226180' => 'RP11-278A23.1',
'ENSG00000243705' => 'RP11-178L8.1',
'ENSG00000260177' => 'RP4-536B24.3',
'ENSG00000260456' => 'C16orf95',
'ENSG00000260498' => 'RP4-536B24.4',
'ENSG00000260671' => 'RP11-278A23.2',
'ENSG00000260750' => 'RP11-482M8.1',
'ENSG00000261095' => 'RP11-899L11.1',
'ENSG00000261592' => 'RP11-178L8.3',
'ENSG00000261651' => 'RP11-899L11.3',
'ENSG00000261697' => 'RP11-178L8.5',
'ENSG00000269901' => 'RP11-178L8.9',
'ENSG00000269935' => 'RP11-482M8.3',
'ENSG00000270006' => 'RP11-178L8.7',
'ENSG00000270082' => 'RP11-178L8.8',
'ENSG00000276337' => 'RP11-106D4.2',
'ENSG00000276393' => 'RP11-106D4.3',
'ENSG00000277504' => 'RP11-278A23.4',
'ENSG00000280419' => 'RP11-178L8.6',
'ENSMUSG00000025316' => 'Banp',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000025318' => 'Jph3',
'ENSMUSG00000031809' => '1700018B08Rik',
'ENSMUSG00000031812' => 'Map1lc3b',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000040263' => 'Klhdc4',
'ENSMUSG00000052934' => 'Fbxo31',
'ENSMUSG00000061410' => 'Zcchc14',
'ENSMUSG00000064642' => 'Gm23299',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000077421' => 'Gm24283',
'ENSMUSG00000092418' => 'Gm20406',
'ENSMUSG00000097424' => '1700030M09Rik',
'ENSMUSG00000097438' => 'Gm26784',
'ENSMUSG00000097783' => 'Gm26747',
'ENSMUSG00000097812' => 'Gm26812',
'ENSMUSG00000097969' => 'Gm26999',
'ENSMUSG00000097987' => 'Gm17786',
'ENSMUSG00000098109' => '9530085P06Rik',
'ENSMUSG00000098184' => 'Gm27011',
'ENSMUSG00000098211' => 'Gm27045',
'ENSMUSG00000098221' => 'Gm27030'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 39 => 'Brain',
(int) 55 => 'Breast',
(int) 67 => 'Colon',
(int) 80 => 'Heart',
(int) 97 => 'Kidney',
(int) 112 => 'Liver',
(int) 130 => 'Lung',
(int) 141 => 'Muscle',
(int) 154 => 'Ovary',
(int) 170 => 'Placenta',
(int) 184 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 153,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000311635' => array(
'start' => '87326987',
'end' => '87383757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-001'
),
'ENST00000561664' => array(
'start' => '87343746',
'end' => '87367508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-005'
),
'ENST00000563113' => array(
'start' => '87335348',
'end' => '87389850',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-006'
),
'ENST00000563956' => array(
'start' => '87367745',
'end' => '87383751',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-004'
),
'ENST00000565593' => array(
'start' => '87329336',
'end' => '87383763',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FBXO31-002'
),
'ENST00000567622' => array(
'start' => '87386011',
'end' => '87392142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-007'
),
'ENST00000569412' => array(
'start' => '87367652',
'end' => '87392107',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-008'
),
'ENST00000618298' => array(
'start' => '87326987',
'end' => '87392107',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-201'
),
'ENST00000270583' => array(
'start' => '87707813',
'end' => '87765949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-001'
),
'ENST00000316853' => array(
'start' => '87707812',
'end' => '87750942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-008'
),
'ENST00000347925' => array(
'start' => '87707812',
'end' => '87765976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-004'
),
'ENST00000353170' => array(
'start' => '87707812',
'end' => '87765899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-002'
),
'ENST00000446344' => array(
'start' => '87701639',
'end' => '87702514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-201'
),
'ENST00000561825' => array(
'start' => '87748799',
'end' => '87765931',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-015'
),
'ENST00000562155' => array(
'start' => '87707840',
'end' => '87765929',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-003'
),
'ENST00000562261' => array(
'start' => '87709438',
'end' => '87765951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-019'
),
'ENST00000562872' => array(
'start' => '87726821',
'end' => '87731006',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-023'
),
'ENST00000562913' => array(
'start' => '87710798',
'end' => '87726917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-024'
),
'ENST00000563845' => array(
'start' => '87761958',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-014'
),
'ENST00000564396' => array(
'start' => '87730636',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-018'
),
'ENST00000564484' => array(
'start' => '87726899',
'end' => '87765933',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-020'
),
'ENST00000565328' => array(
'start' => '87729318',
'end' => '87762154',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-021'
),
'ENST00000566349' => array(
'start' => '87707813',
'end' => '87743044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-009'
),
'ENST00000566561' => array(
'start' => '87763485',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-013'
),
'ENST00000566661' => array(
'start' => '87709463',
'end' => '87762016',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-007'
),
'ENST00000567298' => array(
'start' => '87698149',
'end' => '87765972',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-005'
),
'ENST00000567513' => array(
'start' => '87711236',
'end' => '87740964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-022'
),
'ENST00000568338' => array(
'start' => '87755198',
'end' => '87765992',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-012'
),
'ENST00000568346' => array(
'start' => '87700778',
'end' => '87701724',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-026'
),
'ENST00000568444' => array(
'start' => '87696485',
'end' => '87699415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-027'
),
'ENST00000568499' => array(
'start' => '87703026',
'end' => '87708387',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-025'
),
'ENST00000568502' => array(
'start' => '87748738',
'end' => '87765964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-016'
),
'ENST00000569487' => array(
'start' => '87707816',
'end' => '87710877',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-010'
),
'ENST00000569747' => array(
'start' => '87730607',
'end' => '87765967',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-017'
),
'ENST00000622456' => array(
'start' => '87707914',
'end' => '87765992',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-202'
),
'ENST00000568879' => array(
'start' => '87302876',
'end' => '87334273',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RP11-178L8.4-001'
),
'ENST00000268607' => array(
'start' => '87391800',
'end' => '87404779',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAP1LC3B-001'
),
'ENST00000561823' => array(
'start' => '87383995',
'end' => '87391740',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-007'
),
'ENST00000562778' => array(
'start' => '87384056',
'end' => '87391853',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-006'
),
'ENST00000563720' => array(
'start' => '87389770',
'end' => '87391738',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-008'
),
'ENST00000564638' => array(
'start' => '87392423',
'end' => '87399504',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MAP1LC3B-004'
),
'ENST00000564844' => array(
'start' => '87392344',
'end' => '87404779',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAP1LC3B-003'
),
'ENST00000565788' => array(
'start' => '87392334',
'end' => '87402609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAP1LC3B-005'
),
'ENST00000570189' => array(
'start' => '87392317',
'end' => '87403778',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAP1LC3B-002'
),
'ENST00000599768' => array(
'start' => '87389761',
'end' => '87391738',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-009'
),
'ENST00000268616' => array(
'start' => '87406246',
'end' => '87492045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZCCHC14-001'
),
'ENST00000561928' => array(
'start' => '87411412',
'end' => '87433134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZCCHC14-003'
),
'ENST00000565193' => array(
'start' => '87415312',
'end' => '87417926',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZCCHC14-004'
),
'ENST00000568020' => array(
'start' => '87406257',
'end' => '87491859',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZCCHC14-002'
),
'ENST00000284262' => array(
'start' => '87602905',
'end' => '87698156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'JPH3-001'
),
'ENST00000301008' => array(
'start' => '87602887',
'end' => '87604627',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'JPH3-003'
),
'ENST00000537256' => array(
'start' => '87601835',
'end' => '87697927',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'JPH3-002'
),
'ENST00000563609' => array(
'start' => '87653562',
'end' => '87698142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'JPH3-004'
),
'ENST00000538868' => array(
'start' => '87693537',
'end' => '87696147',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-278A23.1-001'
),
'ENST00000465012' => array(
'start' => '87268185',
'end' => '87268337',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-178L8.1-001'
),
'ENST00000561567' => array(
'start' => '87780134',
'end' => '87806476',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-536B24.3-001'
),
'ENST00000253461' => array(
'start' => '87302814',
'end' => '87317416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C16orf95-002'
),
'ENST00000562840' => array(
'start' => '87083562',
'end' => '87302762',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C16orf95-006'
),
'ENST00000564821' => array(
'start' => '87293011',
'end' => '87303073',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C16orf95-005'
),
'ENST00000565212' => array(
'start' => '87302814',
'end' => '87306125',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C16orf95-004'
),
'ENST00000567970' => array(
'start' => '87302884',
'end' => '87317380',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C16orf95-003'
),
'ENST00000618367' => array(
'start' => '87302801',
'end' => '87317420',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C16orf95-201'
),
'ENST00000618912' => array(
'start' => '87302814',
'end' => '87303655',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C16orf95-001'
),
'ENST00000563993' => array(
'start' => '87773488',
'end' => '87779374',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-536B24.4-001'
),
'ENST00000570159' => array(
'start' => '87773511',
'end' => '87779148',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-536B24.4-002'
),
'ENST00000563036' => array(
'start' => '87739771',
'end' => '87747706',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-278A23.2-001'
),
'ENST00000562466' => array(
'start' => '87492555',
'end' => '87496998',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-482M8.1-002'
),
'ENST00000563921' => array(
'start' => '87494187',
'end' => '87515635',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-482M8.1-003'
),
'ENST00000565824' => array(
'start' => '87493274',
'end' => '87497166',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-482M8.1-001'
),
'ENST00000566092' => array(
'start' => '87212122',
'end' => '87226430',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-899L11.1-001'
),
'ENST00000569147' => array(
'start' => '87396704',
'end' => '87400295',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.3-001'
),
'ENST00000562873' => array(
'start' => '87215915',
'end' => '87216452',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-899L11.3-001'
),
'ENST00000561709' => array(
'start' => '87271907',
'end' => '87292409',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-003'
),
'ENST00000568824' => array(
'start' => '87290726',
'end' => '87292038',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-004'
),
'ENST00000569872' => array(
'start' => '87267258',
'end' => '87292438',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-001'
),
'ENST00000570286' => array(
'start' => '87262759',
'end' => '87292438',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-002'
),
'ENST00000602779' => array(
'start' => '87362536',
'end' => '87367476',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.9-001'
),
'ENST00000602388' => array(
'start' => '87600526',
'end' => '87602190',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-482M8.3-001'
),
'ENST00000602282' => array(
'start' => '87317509',
'end' => '87318043',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.7-001'
),
'ENST00000602665' => array(
'start' => '87326987',
'end' => '87327584',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.8-001'
),
'ENST00000612833' => array(
'start' => '87470370',
'end' => '87474370',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-106D4.2-001'
),
'ENST00000610567' => array(
'start' => '87467138',
'end' => '87467654',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP11-106D4.3-001'
),
'ENST00000620306' => array(
'start' => '87683945',
'end' => '87684477',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-278A23.4-001'
),
'ENST00000623341' => array(
'start' => '87296949',
'end' => '87297633',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-178L8.6-001'
),
'ENSMUST00000026354' => array(
'start' => '121950580',
'end' => '122025937',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-003'
),
'ENSMUST00000093078' => array(
'start' => '121950492',
'end' => '122026177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-002'
),
'ENSMUST00000167711' => array(
'start' => '121991604',
'end' => '122025958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-004'
),
'ENSMUST00000170857' => array(
'start' => '121950544',
'end' => '122029258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-001'
),
'ENSMUST00000172511' => array(
'start' => '121950605',
'end' => '121991586',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-013'
),
'ENSMUST00000172513' => array(
'start' => '121978322',
'end' => '121990002',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-011'
),
'ENSMUST00000172628' => array(
'start' => '121949750',
'end' => '121997183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-005'
),
'ENSMUST00000172681' => array(
'start' => '121950575',
'end' => '121997181',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Banp-010'
),
'ENSMUST00000173201' => array(
'start' => '122000847',
'end' => '122007140',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-007'
),
'ENSMUST00000173254' => array(
'start' => '121974496',
'end' => '122025635',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-016'
),
'ENSMUST00000173396' => array(
'start' => '121997089',
'end' => '122025607',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-009'
),
'ENSMUST00000173753' => array(
'start' => '121974448',
'end' => '121976487',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-012'
),
'ENSMUST00000173925' => array(
'start' => '122000669',
'end' => '122020643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Banp-006'
),
'ENSMUST00000174327' => array(
'start' => '121991458',
'end' => '121997238',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-008'
),
'ENSMUST00000174445' => array(
'start' => '121950596',
'end' => '121991560',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Banp-014'
),
'ENSMUST00000174753' => array(
'start' => '121950585',
'end' => '121991569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-015'
),
'ENSMUST00000057653' => array(
'start' => '121916126',
'end' => '121944904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Car5a-001'
),
'ENSMUST00000151462' => array(
'start' => '121918054',
'end' => '121927474',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Car5a-002'
),
'ENSMUST00000026357' => array(
'start' => '121730563',
'end' => '121790821',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Jph3-001'
),
'ENSMUST00000167439' => array(
'start' => '121730567',
'end' => '121794276',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Jph3-002'
),
'ENSMUST00000169735' => array(
'start' => '121729623',
'end' => '121789617',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Jph3-003'
),
'ENSMUST00000172209' => array(
'start' => '121753476',
'end' => '121782570',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Jph3-004'
),
'ENSMUST00000034265' => array(
'start' => '121530780',
'end' => '121541954',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700018B08Rik-001'
),
'ENSMUST00000182460' => array(
'start' => '121531814',
'end' => '121544320',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700018B08Rik-004'
),
'ENSMUST00000182739' => array(
'start' => '121530828',
'end' => '121541869',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => '1700018B08Rik-002'
),
'ENSMUST00000183280' => array(
'start' => '121530828',
'end' => '121541869',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => '1700018B08Rik-003'
),
'ENSMUST00000034270' => array(
'start' => '121590361',
'end' => '121598760',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Map1lc3b-001'
),
'ENSMUST00000180548' => array(
'start' => '121590481',
'end' => '121598046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Map1lc3b-002'
),
'ENSMUST00000181521' => array(
'start' => '121590712',
'end' => '121596995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Map1lc3b-005'
),
'ENSMUST00000181826' => array(
'start' => '121590477',
'end' => '121593109',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Map1lc3b-004'
),
'ENSMUST00000181948' => array(
'start' => '121590484',
'end' => '121597012',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Map1lc3b-003'
),
'ENSMUST00000045557' => array(
'start' => '121881150',
'end' => '121907694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc7a5-001'
),
'ENSMUST00000182165' => array(
'start' => '121882802',
'end' => '121883914',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Slc7a5-003'
),
'ENSMUST00000183015' => array(
'start' => '121888374',
'end' => '121896502',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Slc7a5-002'
),
'ENSMUST00000045884' => array(
'start' => '121796313',
'end' => '121829569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-001'
),
'ENSMUST00000172470' => array(
'start' => '121821009',
'end' => '121829509',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-007'
),
'ENSMUST00000172507' => array(
'start' => '121798183',
'end' => '121805320',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Klhdc4-008'
),
'ENSMUST00000172954' => array(
'start' => '121799485',
'end' => '121801599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-009'
),
'ENSMUST00000174192' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-005'
),
'ENSMUST00000174206' => array(
'start' => '121796344',
'end' => '121797428',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-010'
),
'ENSMUST00000174255' => array(
'start' => '121821303',
'end' => '121829504',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Klhdc4-006'
),
'ENSMUST00000174665' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Klhdc4-004'
),
'ENSMUST00000174709' => array(
'start' => '121796333',
'end' => '121829540',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-002'
),
'ENSMUST00000174717' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-003'
),
'ENSMUST00000059018' => array(
'start' => '121549440',
'end' => '121578806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fbxo31-001'
),
'ENSMUST00000180539' => array(
'start' => '121555623',
'end' => '121559963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fbxo31-003'
),
'ENSMUST00000180979' => array(
'start' => '121553999',
'end' => '121559099',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fbxo31-004'
),
'ENSMUST00000181663' => array(
'start' => '121564331',
'end' => '121578790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fbxo31-002'
),
'ENSMUST00000046386' => array(
'start' => '121598703',
'end' => '121652901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zcchc14-001'
),
'ENSMUST00000134212' => array(
'start' => '121608585',
'end' => '121628610',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zcchc14-003'
),
'ENSMUST00000139379' => array(
'start' => '121606214',
'end' => '121607218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zcchc14-004'
),
'ENSMUST00000154725' => array(
'start' => '121600350',
'end' => '121604514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zcchc14-002'
),
'ENSMUST00000082708' => array(
'start' => '121666628',
'end' => '121666706',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23299-201'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000104233' => array(
'start' => '121830436',
'end' => '121830542',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24283-201'
),
'ENSMUST00000173993' => array(
'start' => '121806415',
'end' => '121807369',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20406-001'
),
'ENSMUST00000181133' => array(
'start' => '121544382',
'end' => '121548342',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-002'
),
'ENSMUST00000181679' => array(
'start' => '121544388',
'end' => '121547652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-001'
),
'ENSMUST00000181666' => array(
'start' => '121434980',
'end' => '121435389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26784-001'
),
'ENSMUST00000180597' => array(
'start' => '121421345',
'end' => '121427188',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26747-001'
),
'ENSMUST00000181647' => array(
'start' => '121851883',
'end' => '121860325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-002'
),
'ENSMUST00000181776' => array(
'start' => '121850194',
'end' => '121860621',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-001'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
),
'ENSMUST00000182000' => array(
'start' => '121581765',
'end' => '121582191',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm17786-001'
),
'ENSMUST00000182121' => array(
'start' => '121856777',
'end' => '121857603',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9530085P06Rik-001'
),
'ENSMUST00000182352' => array(
'start' => '121949674',
'end' => '121950645',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27011-001'
),
'ENSMUST00000182145' => array(
'start' => '121542122',
'end' => '121543481',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27045-001'
),
'ENSMUST00000182551' => array(
'start' => '121654054',
'end' => '121654517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm27030-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
'ENSG00000103264' => array(
[maximum depth reached]
),
'ENSG00000104731' => array(
[maximum depth reached]
),
'ENSG00000140941' => array(
[maximum depth reached]
),
'ENSG00000140948' => array(
[maximum depth reached]
),
'ENSG00000154118' => array(
[maximum depth reached]
),
'ENSG00000226180' => array(
[maximum depth reached]
),
'ENSG00000243705' => array(
[maximum depth reached]
),
'ENSG00000260177' => array(
[maximum depth reached]
),
'ENSG00000260498' => array(
[maximum depth reached]
),
'ENSG00000260671' => array(
[maximum depth reached]
),
'ENSG00000260750' => array(
[maximum depth reached]
),
'ENSG00000261095' => array(
[maximum depth reached]
),
'ENSG00000261592' => array(
[maximum depth reached]
),
'ENSG00000261651' => array(
[maximum depth reached]
),
'ENSG00000261697' => array(
[maximum depth reached]
),
'ENSG00000270006' => array(
[maximum depth reached]
),
'ENSG00000276337' => array(
[maximum depth reached]
),
'ENSG00000276393' => array(
[maximum depth reached]
),
'ENSG00000280419' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Adipose',
(int) 31 => 'Heart',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Kidney',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Colon',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Adrenal',
(int) 55 => 'Liver',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Muscle',
(int) 59 => 'Muscle',
(int) 60 => 'Heart',
(int) 61 => 'Liver',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Lung',
(int) 94 => 'Muscle',
(int) 95 => 'Placenta',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Breast',
(int) 116 => 'Adipose',
(int) 117 => 'Adrenal',
(int) 118 => 'Brain',
(int) 119 => 'Heart',
(int) 120 => 'Kidney',
(int) 121 => 'Muscle',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adrenal',
(int) 132 => 'Brain',
(int) 133 => 'Breast',
(int) 134 => 'Heart',
(int) 135 => 'Kidney',
(int) 136 => 'Liver',
(int) 137 => 'Muscle',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Testis',
(int) 146 => 'Kidney',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Ovary',
(int) 154 => 'Testis',
(int) 155 => 'Ovary',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Testis',
(int) 169 => 'Brain',
(int) 170 => 'Testis',
(int) 171 => 'Brain',
(int) 172 => 'Lung',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Testis',
(int) 178 => 'Adrenal',
(int) 179 => 'Testis',
(int) 180 => 'Adipose',
(int) 181 => 'Adrenal',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Liver',
(int) 187 => 'Lung',
(int) 188 => 'Ovary',
(int) 189 => 'Placenta',
(int) 190 => 'Testis',
(int) 191 => 'Adipose',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Breast',
(int) 196 => 'Colon',
(int) 197 => 'Heart',
(int) 198 => 'Kidney',
(int) 199 => 'Liver',
(int) 200 => 'Lung',
(int) 201 => 'Muscle',
(int) 202 => 'Ovary',
(int) 203 => 'Placenta',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Colon',
(int) 207 => 'Heart',
(int) 208 => 'Ovary',
(int) 209 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000103264' => 'F-box protein 31',
'ENSG00000104731' => 'kelch domain containing 4',
'ENSG00000131152' => null,
'ENSG00000140941' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSG00000140948' => 'zinc finger, CCHC domain containing 14',
'ENSG00000154118' => 'junctophilin 3',
'ENSG00000226180' => null,
'ENSG00000243705' => null,
'ENSG00000260177' => null,
'ENSG00000260456' => 'chromosome 16 open reading frame 95',
'ENSG00000260498' => null,
'ENSG00000260671' => null,
'ENSG00000260750' => null,
'ENSG00000261095' => null,
'ENSG00000261592' => null,
'ENSG00000261651' => null,
'ENSG00000261697' => null,
'ENSG00000269901' => null,
'ENSG00000269935' => null,
'ENSG00000270006' => null,
'ENSG00000270082' => null,
'ENSG00000276337' => null,
'ENSG00000276393' => null,
'ENSG00000277504' => null,
'ENSG00000280419' => null,
'ENSMUSG00000025316' => 'BTG3 associated nuclear protein',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000025318' => 'junctophilin 3',
'ENSMUSG00000031809' => 'RIKEN cDNA 1700018B08 gene',
'ENSMUSG00000031812' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000040263' => 'kelch domain containing 4',
'ENSMUSG00000052934' => 'F-box protein 31',
'ENSMUSG00000061410' => 'zinc finger, CCHC domain containing 14',
'ENSMUSG00000064642' => 'predicted gene, 23299',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000077421' => 'predicted gene, 24283',
'ENSMUSG00000092418' => 'predicted gene 20406',
'ENSMUSG00000097424' => 'RIKEN cDNA 1700030M09 gene',
'ENSMUSG00000097438' => 'predicted gene, 26784',
'ENSMUSG00000097783' => 'predicted gene, 26747',
'ENSMUSG00000097812' => 'predicted gene, 26812',
'ENSMUSG00000097969' => 'predicted gene, 26999',
'ENSMUSG00000097987' => 'predicted gene, 17786',
'ENSMUSG00000098109' => 'RIKEN cDNA 9530085P06 gene',
'ENSMUSG00000098184' => 'predicted gene, 27011',
'ENSMUSG00000098211' => 'predicted gene, 27045',
'ENSMUSG00000098221' => 'predicted gene, 27030'
)
$gene_name_arr = array(
'ENSG00000103264' => 'FBXO31',
'ENSG00000104731' => 'KLHDC4',
'ENSG00000131152' => 'RP11-178L8.4',
'ENSG00000140941' => 'MAP1LC3B',
'ENSG00000140948' => 'ZCCHC14',
'ENSG00000154118' => 'JPH3',
'ENSG00000226180' => 'RP11-278A23.1',
'ENSG00000243705' => 'RP11-178L8.1',
'ENSG00000260177' => 'RP4-536B24.3',
'ENSG00000260456' => 'C16orf95',
'ENSG00000260498' => 'RP4-536B24.4',
'ENSG00000260671' => 'RP11-278A23.2',
'ENSG00000260750' => 'RP11-482M8.1',
'ENSG00000261095' => 'RP11-899L11.1',
'ENSG00000261592' => 'RP11-178L8.3',
'ENSG00000261651' => 'RP11-899L11.3',
'ENSG00000261697' => 'RP11-178L8.5',
'ENSG00000269901' => 'RP11-178L8.9',
'ENSG00000269935' => 'RP11-482M8.3',
'ENSG00000270006' => 'RP11-178L8.7',
'ENSG00000270082' => 'RP11-178L8.8',
'ENSG00000276337' => 'RP11-106D4.2',
'ENSG00000276393' => 'RP11-106D4.3',
'ENSG00000277504' => 'RP11-278A23.4',
'ENSG00000280419' => 'RP11-178L8.6',
'ENSMUSG00000025316' => 'Banp',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000025318' => 'Jph3',
'ENSMUSG00000031809' => '1700018B08Rik',
'ENSMUSG00000031812' => 'Map1lc3b',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000040263' => 'Klhdc4',
'ENSMUSG00000052934' => 'Fbxo31',
'ENSMUSG00000061410' => 'Zcchc14',
'ENSMUSG00000064642' => 'Gm23299',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000077421' => 'Gm24283',
'ENSMUSG00000092418' => 'Gm20406',
'ENSMUSG00000097424' => '1700030M09Rik',
'ENSMUSG00000097438' => 'Gm26784',
'ENSMUSG00000097783' => 'Gm26747',
'ENSMUSG00000097812' => 'Gm26812',
'ENSMUSG00000097969' => 'Gm26999',
'ENSMUSG00000097987' => 'Gm17786',
'ENSMUSG00000098109' => '9530085P06Rik',
'ENSMUSG00000098184' => 'Gm27011',
'ENSMUSG00000098211' => 'Gm27045',
'ENSMUSG00000098221' => 'Gm27030'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008WG_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '87215497',
'seq_end' => '87815964',
'region_length' => '600467',
'region_type' => 'VISTA',
'el_id' => 'mm338'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008WG_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121365198',
'seq_end' => '121966118',
'region_length' => '600920',
'region_type' => 'VISTA',
'el_id' => 'mm338'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 39 => 'Brain',
(int) 55 => 'Breast',
(int) 67 => 'Colon',
(int) 80 => 'Heart',
(int) 97 => 'Kidney',
(int) 112 => 'Liver',
(int) 130 => 'Lung',
(int) 141 => 'Muscle',
(int) 154 => 'Ovary',
(int) 170 => 'Placenta',
(int) 184 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 153
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000311635' => array(
'start' => '87326987',
'end' => '87383757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-001'
),
'ENST00000561664' => array(
'start' => '87343746',
'end' => '87367508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-005'
),
'ENST00000563113' => array(
'start' => '87335348',
'end' => '87389850',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-006'
),
'ENST00000563956' => array(
'start' => '87367745',
'end' => '87383751',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-004'
),
'ENST00000565593' => array(
'start' => '87329336',
'end' => '87383763',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FBXO31-002'
),
'ENST00000567622' => array(
'start' => '87386011',
'end' => '87392142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-007'
),
'ENST00000569412' => array(
'start' => '87367652',
'end' => '87392107',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-008'
),
'ENST00000618298' => array(
'start' => '87326987',
'end' => '87392107',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-201'
),
'ENST00000270583' => array(
'start' => '87707813',
'end' => '87765949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-001'
),
'ENST00000316853' => array(
'start' => '87707812',
'end' => '87750942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-008'
),
'ENST00000347925' => array(
'start' => '87707812',
'end' => '87765976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-004'
),
'ENST00000353170' => array(
'start' => '87707812',
'end' => '87765899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-002'
),
'ENST00000446344' => array(
'start' => '87701639',
'end' => '87702514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-201'
),
'ENST00000561825' => array(
'start' => '87748799',
'end' => '87765931',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-015'
),
'ENST00000562155' => array(
'start' => '87707840',
'end' => '87765929',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-003'
),
'ENST00000562261' => array(
'start' => '87709438',
'end' => '87765951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-019'
),
'ENST00000562872' => array(
'start' => '87726821',
'end' => '87731006',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-023'
),
'ENST00000562913' => array(
'start' => '87710798',
'end' => '87726917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-024'
),
'ENST00000563845' => array(
'start' => '87761958',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-014'
),
'ENST00000564396' => array(
'start' => '87730636',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-018'
),
'ENST00000564484' => array(
'start' => '87726899',
'end' => '87765933',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-020'
),
'ENST00000565328' => array(
'start' => '87729318',
'end' => '87762154',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-021'
),
'ENST00000566349' => array(
'start' => '87707813',
'end' => '87743044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-009'
),
'ENST00000566561' => array(
'start' => '87763485',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-013'
),
'ENST00000566661' => array(
'start' => '87709463',
'end' => '87762016',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-007'
),
'ENST00000567298' => array(
'start' => '87698149',
'end' => '87765972',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-005'
),
'ENST00000567513' => array(
'start' => '87711236',
'end' => '87740964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-022'
),
'ENST00000568338' => array(
'start' => '87755198',
'end' => '87765992',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-012'
),
'ENST00000568346' => array(
'start' => '87700778',
'end' => '87701724',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-026'
),
'ENST00000568444' => array(
'start' => '87696485',
'end' => '87699415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-027'
),
'ENST00000568499' => array(
'start' => '87703026',
'end' => '87708387',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-025'
),
'ENST00000568502' => array(
'start' => '87748738',
'end' => '87765964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-016'
),
'ENST00000569487' => array(
'start' => '87707816',
'end' => '87710877',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-010'
),
'ENST00000569747' => array(
'start' => '87730607',
'end' => '87765967',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-017'
),
'ENST00000622456' => array(
'start' => '87707914',
'end' => '87765992',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-202'
),
'ENST00000568879' => array(
'start' => '87302876',
'end' => '87334273',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RP11-178L8.4-001'
),
'ENST00000268607' => array(
'start' => '87391800',
'end' => '87404779',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAP1LC3B-001'
),
'ENST00000561823' => array(
'start' => '87383995',
'end' => '87391740',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-007'
),
'ENST00000562778' => array(
'start' => '87384056',
'end' => '87391853',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-006'
),
'ENST00000563720' => array(
'start' => '87389770',
'end' => '87391738',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-008'
),
'ENST00000564638' => array(
'start' => '87392423',
'end' => '87399504',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MAP1LC3B-004'
),
'ENST00000564844' => array(
'start' => '87392344',
'end' => '87404779',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAP1LC3B-003'
),
'ENST00000565788' => array(
'start' => '87392334',
'end' => '87402609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAP1LC3B-005'
),
'ENST00000570189' => array(
'start' => '87392317',
'end' => '87403778',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAP1LC3B-002'
),
'ENST00000599768' => array(
'start' => '87389761',
'end' => '87391738',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAP1LC3B-009'
),
'ENST00000268616' => array(
'start' => '87406246',
'end' => '87492045',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZCCHC14-001'
),
'ENST00000561928' => array(
'start' => '87411412',
'end' => '87433134',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZCCHC14-003'
),
'ENST00000565193' => array(
'start' => '87415312',
'end' => '87417926',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ZCCHC14-004'
),
'ENST00000568020' => array(
'start' => '87406257',
'end' => '87491859',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ZCCHC14-002'
),
'ENST00000284262' => array(
'start' => '87602905',
'end' => '87698156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'JPH3-001'
),
'ENST00000301008' => array(
'start' => '87602887',
'end' => '87604627',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'JPH3-003'
),
'ENST00000537256' => array(
'start' => '87601835',
'end' => '87697927',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'JPH3-002'
),
'ENST00000563609' => array(
'start' => '87653562',
'end' => '87698142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'JPH3-004'
),
'ENST00000538868' => array(
'start' => '87693537',
'end' => '87696147',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-278A23.1-001'
),
'ENST00000465012' => array(
'start' => '87268185',
'end' => '87268337',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-178L8.1-001'
),
'ENST00000561567' => array(
'start' => '87780134',
'end' => '87806476',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-536B24.3-001'
),
'ENST00000253461' => array(
'start' => '87302814',
'end' => '87317416',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C16orf95-002'
),
'ENST00000562840' => array(
'start' => '87083562',
'end' => '87302762',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C16orf95-006'
),
'ENST00000564821' => array(
'start' => '87293011',
'end' => '87303073',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C16orf95-005'
),
'ENST00000565212' => array(
'start' => '87302814',
'end' => '87306125',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C16orf95-004'
),
'ENST00000567970' => array(
'start' => '87302884',
'end' => '87317380',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C16orf95-003'
),
'ENST00000618367' => array(
'start' => '87302801',
'end' => '87317420',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C16orf95-201'
),
'ENST00000618912' => array(
'start' => '87302814',
'end' => '87303655',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C16orf95-001'
),
'ENST00000563993' => array(
'start' => '87773488',
'end' => '87779374',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-536B24.4-001'
),
'ENST00000570159' => array(
'start' => '87773511',
'end' => '87779148',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP4-536B24.4-002'
),
'ENST00000563036' => array(
'start' => '87739771',
'end' => '87747706',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-278A23.2-001'
),
'ENST00000562466' => array(
'start' => '87492555',
'end' => '87496998',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-482M8.1-002'
),
'ENST00000563921' => array(
'start' => '87494187',
'end' => '87515635',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-482M8.1-003'
),
'ENST00000565824' => array(
'start' => '87493274',
'end' => '87497166',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-482M8.1-001'
),
'ENST00000566092' => array(
'start' => '87212122',
'end' => '87226430',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-899L11.1-001'
),
'ENST00000569147' => array(
'start' => '87396704',
'end' => '87400295',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.3-001'
),
'ENST00000562873' => array(
'start' => '87215915',
'end' => '87216452',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-899L11.3-001'
),
'ENST00000561709' => array(
'start' => '87271907',
'end' => '87292409',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-003'
),
'ENST00000568824' => array(
'start' => '87290726',
'end' => '87292038',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-004'
),
'ENST00000569872' => array(
'start' => '87267258',
'end' => '87292438',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-001'
),
'ENST00000570286' => array(
'start' => '87262759',
'end' => '87292438',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-178L8.5-002'
),
'ENST00000602779' => array(
'start' => '87362536',
'end' => '87367476',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.9-001'
),
'ENST00000602388' => array(
'start' => '87600526',
'end' => '87602190',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-482M8.3-001'
),
'ENST00000602282' => array(
'start' => '87317509',
'end' => '87318043',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.7-001'
),
'ENST00000602665' => array(
'start' => '87326987',
'end' => '87327584',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-178L8.8-001'
),
'ENST00000612833' => array(
'start' => '87470370',
'end' => '87474370',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-106D4.2-001'
),
'ENST00000610567' => array(
'start' => '87467138',
'end' => '87467654',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'RP11-106D4.3-001'
),
'ENST00000620306' => array(
'start' => '87683945',
'end' => '87684477',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-278A23.4-001'
),
'ENST00000623341' => array(
'start' => '87296949',
'end' => '87297633',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-178L8.6-001'
),
'ENSMUST00000026354' => array(
'start' => '121950580',
'end' => '122025937',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-003'
),
'ENSMUST00000093078' => array(
'start' => '121950492',
'end' => '122026177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-002'
),
'ENSMUST00000167711' => array(
'start' => '121991604',
'end' => '122025958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-004'
),
'ENSMUST00000170857' => array(
'start' => '121950544',
'end' => '122029258',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-001'
),
'ENSMUST00000172511' => array(
'start' => '121950605',
'end' => '121991586',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-013'
),
'ENSMUST00000172513' => array(
'start' => '121978322',
'end' => '121990002',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-011'
),
'ENSMUST00000172628' => array(
'start' => '121949750',
'end' => '121997183',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-005'
),
'ENSMUST00000172681' => array(
'start' => '121950575',
'end' => '121997181',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Banp-010'
),
'ENSMUST00000173201' => array(
'start' => '122000847',
'end' => '122007140',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-007'
),
'ENSMUST00000173254' => array(
'start' => '121974496',
'end' => '122025635',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-016'
),
'ENSMUST00000173396' => array(
'start' => '121997089',
'end' => '122025607',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-009'
),
'ENSMUST00000173753' => array(
'start' => '121974448',
'end' => '121976487',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-012'
),
'ENSMUST00000173925' => array(
'start' => '122000669',
'end' => '122020643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Banp-006'
),
'ENSMUST00000174327' => array(
'start' => '121991458',
'end' => '121997238',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Banp-008'
),
'ENSMUST00000174445' => array(
'start' => '121950596',
'end' => '121991560',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Banp-014'
),
'ENSMUST00000174753' => array(
'start' => '121950585',
'end' => '121991569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Banp-015'
),
'ENSMUST00000057653' => array(
'start' => '121916126',
'end' => '121944904',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Car5a-001'
),
'ENSMUST00000151462' => array(
'start' => '121918054',
'end' => '121927474',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Car5a-002'
),
'ENSMUST00000026357' => array(
'start' => '121730563',
'end' => '121790821',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Jph3-001'
),
'ENSMUST00000167439' => array(
'start' => '121730567',
'end' => '121794276',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Jph3-002'
),
'ENSMUST00000169735' => array(
'start' => '121729623',
'end' => '121789617',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Jph3-003'
),
'ENSMUST00000172209' => array(
'start' => '121753476',
'end' => '121782570',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Jph3-004'
),
'ENSMUST00000034265' => array(
'start' => '121530780',
'end' => '121541954',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700018B08Rik-001'
),
'ENSMUST00000182460' => array(
'start' => '121531814',
'end' => '121544320',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '1700018B08Rik-004'
),
'ENSMUST00000182739' => array(
'start' => '121530828',
'end' => '121541869',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => '1700018B08Rik-002'
),
'ENSMUST00000183280' => array(
'start' => '121530828',
'end' => '121541869',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => '1700018B08Rik-003'
),
'ENSMUST00000034270' => array(
'start' => '121590361',
'end' => '121598760',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Map1lc3b-001'
),
'ENSMUST00000180548' => array(
'start' => '121590481',
'end' => '121598046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Map1lc3b-002'
),
'ENSMUST00000181521' => array(
'start' => '121590712',
'end' => '121596995',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Map1lc3b-005'
),
'ENSMUST00000181826' => array(
'start' => '121590477',
'end' => '121593109',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Map1lc3b-004'
),
'ENSMUST00000181948' => array(
'start' => '121590484',
'end' => '121597012',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Map1lc3b-003'
),
'ENSMUST00000045557' => array(
'start' => '121881150',
'end' => '121907694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc7a5-001'
),
'ENSMUST00000182165' => array(
'start' => '121882802',
'end' => '121883914',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Slc7a5-003'
),
'ENSMUST00000183015' => array(
'start' => '121888374',
'end' => '121896502',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Slc7a5-002'
),
'ENSMUST00000045884' => array(
'start' => '121796313',
'end' => '121829569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-001'
),
'ENSMUST00000172470' => array(
'start' => '121821009',
'end' => '121829509',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-007'
),
'ENSMUST00000172507' => array(
'start' => '121798183',
'end' => '121805320',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Klhdc4-008'
),
'ENSMUST00000172954' => array(
'start' => '121799485',
'end' => '121801599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-009'
),
'ENSMUST00000174192' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-005'
),
'ENSMUST00000174206' => array(
'start' => '121796344',
'end' => '121797428',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-010'
),
'ENSMUST00000174255' => array(
'start' => '121821303',
'end' => '121829504',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Klhdc4-006'
),
'ENSMUST00000174665' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Klhdc4-004'
),
'ENSMUST00000174709' => array(
'start' => '121796333',
'end' => '121829540',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-002'
),
'ENSMUST00000174717' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-003'
),
'ENSMUST00000059018' => array(
'start' => '121549440',
'end' => '121578806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fbxo31-001'
),
'ENSMUST00000180539' => array(
'start' => '121555623',
'end' => '121559963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fbxo31-003'
),
'ENSMUST00000180979' => array(
'start' => '121553999',
'end' => '121559099',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fbxo31-004'
),
'ENSMUST00000181663' => array(
'start' => '121564331',
'end' => '121578790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fbxo31-002'
),
'ENSMUST00000046386' => array(
'start' => '121598703',
'end' => '121652901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zcchc14-001'
),
'ENSMUST00000134212' => array(
'start' => '121608585',
'end' => '121628610',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zcchc14-003'
),
'ENSMUST00000139379' => array(
'start' => '121606214',
'end' => '121607218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zcchc14-004'
),
'ENSMUST00000154725' => array(
'start' => '121600350',
'end' => '121604514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zcchc14-002'
),
'ENSMUST00000082708' => array(
'start' => '121666628',
'end' => '121666706',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23299-201'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000104233' => array(
'start' => '121830436',
'end' => '121830542',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24283-201'
),
'ENSMUST00000173993' => array(
'start' => '121806415',
'end' => '121807369',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20406-001'
),
'ENSMUST00000181133' => array(
'start' => '121544382',
'end' => '121548342',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-002'
),
'ENSMUST00000181679' => array(
'start' => '121544388',
'end' => '121547652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-001'
),
'ENSMUST00000181666' => array(
'start' => '121434980',
'end' => '121435389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26784-001'
),
'ENSMUST00000180597' => array(
'start' => '121421345',
'end' => '121427188',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26747-001'
),
'ENSMUST00000181647' => array(
'start' => '121851883',
'end' => '121860325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-002'
),
'ENSMUST00000181776' => array(
'start' => '121850194',
'end' => '121860621',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-001'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
),
'ENSMUST00000182000' => array(
'start' => '121581765',
'end' => '121582191',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm17786-001'
),
'ENSMUST00000182121' => array(
'start' => '121856777',
'end' => '121857603',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9530085P06Rik-001'
),
'ENSMUST00000182352' => array(
'start' => '121949674',
'end' => '121950645',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27011-001'
),
'ENSMUST00000182145' => array(
'start' => '121542122',
'end' => '121543481',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27045-001'
),
'ENSMUST00000182551' => array(
'start' => '121654054',
'end' => '121654517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm27030-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
'ENSG00000103264' => array(
[maximum depth reached]
),
'ENSG00000104731' => array(
[maximum depth reached]
),
'ENSG00000140941' => array(
[maximum depth reached]
),
'ENSG00000140948' => array(
[maximum depth reached]
),
'ENSG00000154118' => array(
[maximum depth reached]
),
'ENSG00000226180' => array(
[maximum depth reached]
),
'ENSG00000243705' => array(
[maximum depth reached]
),
'ENSG00000260177' => array(
[maximum depth reached]
),
'ENSG00000260498' => array(
[maximum depth reached]
),
'ENSG00000260671' => array(
[maximum depth reached]
),
'ENSG00000260750' => array(
[maximum depth reached]
),
'ENSG00000261095' => array(
[maximum depth reached]
),
'ENSG00000261592' => array(
[maximum depth reached]
),
'ENSG00000261651' => array(
[maximum depth reached]
),
'ENSG00000261697' => array(
[maximum depth reached]
),
'ENSG00000270006' => array(
[maximum depth reached]
),
'ENSG00000276337' => array(
[maximum depth reached]
),
'ENSG00000276393' => array(
[maximum depth reached]
),
'ENSG00000280419' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Adipose',
(int) 31 => 'Heart',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Kidney',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Colon',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Adrenal',
(int) 55 => 'Liver',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Muscle',
(int) 59 => 'Muscle',
(int) 60 => 'Heart',
(int) 61 => 'Liver',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Lung',
(int) 94 => 'Muscle',
(int) 95 => 'Placenta',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Breast',
(int) 116 => 'Adipose',
(int) 117 => 'Adrenal',
(int) 118 => 'Brain',
(int) 119 => 'Heart',
(int) 120 => 'Kidney',
(int) 121 => 'Muscle',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adrenal',
(int) 132 => 'Brain',
(int) 133 => 'Breast',
(int) 134 => 'Heart',
(int) 135 => 'Kidney',
(int) 136 => 'Liver',
(int) 137 => 'Muscle',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Testis',
(int) 146 => 'Kidney',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Ovary',
(int) 154 => 'Testis',
(int) 155 => 'Ovary',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Testis',
(int) 169 => 'Brain',
(int) 170 => 'Testis',
(int) 171 => 'Brain',
(int) 172 => 'Lung',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Testis',
(int) 178 => 'Adrenal',
(int) 179 => 'Testis',
(int) 180 => 'Adipose',
(int) 181 => 'Adrenal',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Liver',
(int) 187 => 'Lung',
(int) 188 => 'Ovary',
(int) 189 => 'Placenta',
(int) 190 => 'Testis',
(int) 191 => 'Adipose',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Breast',
(int) 196 => 'Colon',
(int) 197 => 'Heart',
(int) 198 => 'Kidney',
(int) 199 => 'Liver',
(int) 200 => 'Lung',
(int) 201 => 'Muscle',
(int) 202 => 'Ovary',
(int) 203 => 'Placenta',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Colon',
(int) 207 => 'Heart',
(int) 208 => 'Ovary',
(int) 209 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008WG_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121365198',
'seq_end' => '121966118',
'region_length' => '600920',
'region_type' => 'VISTA',
'el_id' => 'mm338'
)
)
$gene_el = array(
'ENST00000623341' => array(
'Heart' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.055',
'stddev_FPKM' => '0.02'
)
)
)
$gene_key = 'ENSG00000280419'
$is_first = false
$tran_el = array(
'Heart' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.055',
'stddev_FPKM' => '0.02'
)
)
$tran_key = 'ENST00000623341'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000103264' => 'F-box protein 31',
'ENSG00000104731' => 'kelch domain containing 4',
'ENSG00000131152' => null,
'ENSG00000140941' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSG00000140948' => 'zinc finger, CCHC domain containing 14',
'ENSG00000154118' => 'junctophilin 3',
'ENSG00000226180' => null,
'ENSG00000243705' => null,
'ENSG00000260177' => null,
'ENSG00000260456' => 'chromosome 16 open reading frame 95',
'ENSG00000260498' => null,
'ENSG00000260671' => null,
'ENSG00000260750' => null,
'ENSG00000261095' => null,
'ENSG00000261592' => null,
'ENSG00000261651' => null,
'ENSG00000261697' => null,
'ENSG00000269901' => null,
'ENSG00000269935' => null,
'ENSG00000270006' => null,
'ENSG00000270082' => null,
'ENSG00000276337' => null,
'ENSG00000276393' => null,
'ENSG00000277504' => null,
'ENSG00000280419' => null,
'ENSMUSG00000025316' => 'BTG3 associated nuclear protein',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000025318' => 'junctophilin 3',
'ENSMUSG00000031809' => 'RIKEN cDNA 1700018B08 gene',
'ENSMUSG00000031812' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000040263' => 'kelch domain containing 4',
'ENSMUSG00000052934' => 'F-box protein 31',
'ENSMUSG00000061410' => 'zinc finger, CCHC domain containing 14',
'ENSMUSG00000064642' => 'predicted gene, 23299',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000077421' => 'predicted gene, 24283',
'ENSMUSG00000092418' => 'predicted gene 20406',
'ENSMUSG00000097424' => 'RIKEN cDNA 1700030M09 gene',
'ENSMUSG00000097438' => 'predicted gene, 26784',
'ENSMUSG00000097783' => 'predicted gene, 26747',
'ENSMUSG00000097812' => 'predicted gene, 26812',
'ENSMUSG00000097969' => 'predicted gene, 26999',
'ENSMUSG00000097987' => 'predicted gene, 17786',
'ENSMUSG00000098109' => 'RIKEN cDNA 9530085P06 gene',
'ENSMUSG00000098184' => 'predicted gene, 27011',
'ENSMUSG00000098211' => 'predicted gene, 27045',
'ENSMUSG00000098221' => 'predicted gene, 27030'
),
'gene_name_arr' => array(
'ENSG00000103264' => 'FBXO31',
'ENSG00000104731' => 'KLHDC4',
'ENSG00000131152' => 'RP11-178L8.4',
'ENSG00000140941' => 'MAP1LC3B',
'ENSG00000140948' => 'ZCCHC14',
'ENSG00000154118' => 'JPH3',
'ENSG00000226180' => 'RP11-278A23.1',
'ENSG00000243705' => 'RP11-178L8.1',
'ENSG00000260177' => 'RP4-536B24.3',
'ENSG00000260456' => 'C16orf95',
'ENSG00000260498' => 'RP4-536B24.4',
'ENSG00000260671' => 'RP11-278A23.2',
'ENSG00000260750' => 'RP11-482M8.1',
'ENSG00000261095' => 'RP11-899L11.1',
'ENSG00000261592' => 'RP11-178L8.3',
'ENSG00000261651' => 'RP11-899L11.3',
'ENSG00000261697' => 'RP11-178L8.5',
'ENSG00000269901' => 'RP11-178L8.9',
'ENSG00000269935' => 'RP11-482M8.3',
'ENSG00000270006' => 'RP11-178L8.7',
'ENSG00000270082' => 'RP11-178L8.8',
'ENSG00000276337' => 'RP11-106D4.2',
'ENSG00000276393' => 'RP11-106D4.3',
'ENSG00000277504' => 'RP11-278A23.4',
'ENSG00000280419' => 'RP11-178L8.6',
'ENSMUSG00000025316' => 'Banp',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000025318' => 'Jph3',
'ENSMUSG00000031809' => '1700018B08Rik',
'ENSMUSG00000031812' => 'Map1lc3b',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000040263' => 'Klhdc4',
'ENSMUSG00000052934' => 'Fbxo31',
'ENSMUSG00000061410' => 'Zcchc14',
'ENSMUSG00000064642' => 'Gm23299',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000077421' => 'Gm24283',
'ENSMUSG00000092418' => 'Gm20406',
'ENSMUSG00000097424' => '1700030M09Rik',
'ENSMUSG00000097438' => 'Gm26784',
'ENSMUSG00000097783' => 'Gm26747',
'ENSMUSG00000097812' => 'Gm26812',
'ENSMUSG00000097969' => 'Gm26999',
'ENSMUSG00000097987' => 'Gm17786',
'ENSMUSG00000098109' => '9530085P06Rik',
'ENSMUSG00000098184' => 'Gm27011',
'ENSMUSG00000098211' => 'Gm27045',
'ENSMUSG00000098221' => 'Gm27030'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 39 => 'Brain',
(int) 55 => 'Breast',
(int) 67 => 'Colon',
(int) 80 => 'Heart',
(int) 97 => 'Kidney',
(int) 112 => 'Liver',
(int) 130 => 'Lung',
(int) 141 => 'Muscle',
(int) 154 => 'Ovary',
(int) 170 => 'Placenta',
(int) 184 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 153,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000311635' => array(
'start' => '87326987',
'end' => '87383757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-001'
),
'ENST00000561664' => array(
'start' => '87343746',
'end' => '87367508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-005'
),
'ENST00000563113' => array(
'start' => '87335348',
'end' => '87389850',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-006'
),
'ENST00000563956' => array(
'start' => '87367745',
'end' => '87383751',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-004'
),
'ENST00000565593' => array(
'start' => '87329336',
'end' => '87383763',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FBXO31-002'
),
'ENST00000567622' => array(
'start' => '87386011',
'end' => '87392142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-007'
),
'ENST00000569412' => array(
'start' => '87367652',
'end' => '87392107',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-008'
),
'ENST00000618298' => array(
'start' => '87326987',
'end' => '87392107',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-201'
),
'ENST00000270583' => array(
'start' => '87707813',
'end' => '87765949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-001'
),
'ENST00000316853' => array(
'start' => '87707812',
'end' => '87750942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-008'
),
'ENST00000347925' => array(
'start' => '87707812',
'end' => '87765976',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-004'
),
'ENST00000353170' => array(
'start' => '87707812',
'end' => '87765899',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-002'
),
'ENST00000446344' => array(
'start' => '87701639',
'end' => '87702514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-201'
),
'ENST00000561825' => array(
'start' => '87748799',
'end' => '87765931',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-015'
),
'ENST00000562155' => array(
'start' => '87707840',
'end' => '87765929',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-003'
),
'ENST00000562261' => array(
'start' => '87709438',
'end' => '87765951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-019'
),
'ENST00000562872' => array(
'start' => '87726821',
'end' => '87731006',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-023'
),
'ENST00000562913' => array(
'start' => '87710798',
'end' => '87726917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-024'
),
'ENST00000563845' => array(
'start' => '87761958',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-014'
),
'ENST00000564396' => array(
'start' => '87730636',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-018'
),
'ENST00000564484' => array(
'start' => '87726899',
'end' => '87765933',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-020'
),
'ENST00000565328' => array(
'start' => '87729318',
'end' => '87762154',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-021'
),
'ENST00000566349' => array(
'start' => '87707813',
'end' => '87743044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-009'
),
'ENST00000566561' => array(
'start' => '87763485',
'end' => '87765961',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-013'
),
'ENST00000566661' => array(
'start' => '87709463',
'end' => '87762016',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'KLHDC4-007'
),
'ENST00000567298' => array(
'start' => '87698149',
'end' => '87765972',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'KLHDC4-005'
),
'ENST00000567513' => array(
'start' => '87711236',
'end' => '87740964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-022'
),
'ENST00000568338' => array(
'start' => '87755198',
'end' => '87765992',
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'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000104233' => array(
'start' => '121830436',
'end' => '121830542',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24283-201'
),
'ENSMUST00000173993' => array(
'start' => '121806415',
'end' => '121807369',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20406-001'
),
'ENSMUST00000181133' => array(
'start' => '121544382',
'end' => '121548342',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-002'
),
'ENSMUST00000181679' => array(
'start' => '121544388',
'end' => '121547652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-001'
),
'ENSMUST00000181666' => array(
'start' => '121434980',
'end' => '121435389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26784-001'
),
'ENSMUST00000180597' => array(
'start' => '121421345',
'end' => '121427188',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26747-001'
),
'ENSMUST00000181647' => array(
'start' => '121851883',
'end' => '121860325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-002'
),
'ENSMUST00000181776' => array(
'start' => '121850194',
'end' => '121860621',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-001'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
),
'ENSMUST00000182000' => array(
'start' => '121581765',
'end' => '121582191',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm17786-001'
),
'ENSMUST00000182121' => array(
'start' => '121856777',
'end' => '121857603',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9530085P06Rik-001'
),
'ENSMUST00000182352' => array(
'start' => '121949674',
'end' => '121950645',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27011-001'
),
'ENSMUST00000182145' => array(
'start' => '121542122',
'end' => '121543481',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27045-001'
),
'ENSMUST00000182551' => array(
'start' => '121654054',
'end' => '121654517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm27030-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
'ENSG00000103264' => array(
[maximum depth reached]
),
'ENSG00000104731' => array(
[maximum depth reached]
),
'ENSG00000140941' => array(
[maximum depth reached]
),
'ENSG00000140948' => array(
[maximum depth reached]
),
'ENSG00000154118' => array(
[maximum depth reached]
),
'ENSG00000226180' => array(
[maximum depth reached]
),
'ENSG00000243705' => array(
[maximum depth reached]
),
'ENSG00000260177' => array(
[maximum depth reached]
),
'ENSG00000260498' => array(
[maximum depth reached]
),
'ENSG00000260671' => array(
[maximum depth reached]
),
'ENSG00000260750' => array(
[maximum depth reached]
),
'ENSG00000261095' => array(
[maximum depth reached]
),
'ENSG00000261592' => array(
[maximum depth reached]
),
'ENSG00000261651' => array(
[maximum depth reached]
),
'ENSG00000261697' => array(
[maximum depth reached]
),
'ENSG00000270006' => array(
[maximum depth reached]
),
'ENSG00000276337' => array(
[maximum depth reached]
),
'ENSG00000276393' => array(
[maximum depth reached]
),
'ENSG00000280419' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Adipose',
(int) 31 => 'Heart',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Kidney',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Colon',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Adrenal',
(int) 55 => 'Liver',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Muscle',
(int) 59 => 'Muscle',
(int) 60 => 'Heart',
(int) 61 => 'Liver',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Lung',
(int) 94 => 'Muscle',
(int) 95 => 'Placenta',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Breast',
(int) 116 => 'Adipose',
(int) 117 => 'Adrenal',
(int) 118 => 'Brain',
(int) 119 => 'Heart',
(int) 120 => 'Kidney',
(int) 121 => 'Muscle',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adrenal',
(int) 132 => 'Brain',
(int) 133 => 'Breast',
(int) 134 => 'Heart',
(int) 135 => 'Kidney',
(int) 136 => 'Liver',
(int) 137 => 'Muscle',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Testis',
(int) 146 => 'Kidney',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Ovary',
(int) 154 => 'Testis',
(int) 155 => 'Ovary',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Testis',
(int) 169 => 'Brain',
(int) 170 => 'Testis',
(int) 171 => 'Brain',
(int) 172 => 'Lung',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Testis',
(int) 178 => 'Adrenal',
(int) 179 => 'Testis',
(int) 180 => 'Adipose',
(int) 181 => 'Adrenal',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Liver',
(int) 187 => 'Lung',
(int) 188 => 'Ovary',
(int) 189 => 'Placenta',
(int) 190 => 'Testis',
(int) 191 => 'Adipose',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Breast',
(int) 196 => 'Colon',
(int) 197 => 'Heart',
(int) 198 => 'Kidney',
(int) 199 => 'Liver',
(int) 200 => 'Lung',
(int) 201 => 'Muscle',
(int) 202 => 'Ovary',
(int) 203 => 'Placenta',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Colon',
(int) 207 => 'Heart',
(int) 208 => 'Ovary',
(int) 209 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000103264' => 'F-box protein 31',
'ENSG00000104731' => 'kelch domain containing 4',
'ENSG00000131152' => null,
'ENSG00000140941' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSG00000140948' => 'zinc finger, CCHC domain containing 14',
'ENSG00000154118' => 'junctophilin 3',
'ENSG00000226180' => null,
'ENSG00000243705' => null,
'ENSG00000260177' => null,
'ENSG00000260456' => 'chromosome 16 open reading frame 95',
'ENSG00000260498' => null,
'ENSG00000260671' => null,
'ENSG00000260750' => null,
'ENSG00000261095' => null,
'ENSG00000261592' => null,
'ENSG00000261651' => null,
'ENSG00000261697' => null,
'ENSG00000269901' => null,
'ENSG00000269935' => null,
'ENSG00000270006' => null,
'ENSG00000270082' => null,
'ENSG00000276337' => null,
'ENSG00000276393' => null,
'ENSG00000277504' => null,
'ENSG00000280419' => null,
'ENSMUSG00000025316' => 'BTG3 associated nuclear protein',
'ENSMUSG00000025317' => 'carbonic anhydrase 5a, mitochondrial',
'ENSMUSG00000025318' => 'junctophilin 3',
'ENSMUSG00000031809' => 'RIKEN cDNA 1700018B08 gene',
'ENSMUSG00000031812' => 'microtubule-associated protein 1 light chain 3 beta',
'ENSMUSG00000040010' => 'solute carrier family 7 (cationic amino acid transporter, y+ system), member 5',
'ENSMUSG00000040263' => 'kelch domain containing 4',
'ENSMUSG00000052934' => 'F-box protein 31',
'ENSMUSG00000061410' => 'zinc finger, CCHC domain containing 14',
'ENSMUSG00000064642' => 'predicted gene, 23299',
'ENSMUSG00000074052' => 'cDNA sequence BC048644',
'ENSMUSG00000077421' => 'predicted gene, 24283',
'ENSMUSG00000092418' => 'predicted gene 20406',
'ENSMUSG00000097424' => 'RIKEN cDNA 1700030M09 gene',
'ENSMUSG00000097438' => 'predicted gene, 26784',
'ENSMUSG00000097783' => 'predicted gene, 26747',
'ENSMUSG00000097812' => 'predicted gene, 26812',
'ENSMUSG00000097969' => 'predicted gene, 26999',
'ENSMUSG00000097987' => 'predicted gene, 17786',
'ENSMUSG00000098109' => 'RIKEN cDNA 9530085P06 gene',
'ENSMUSG00000098184' => 'predicted gene, 27011',
'ENSMUSG00000098211' => 'predicted gene, 27045',
'ENSMUSG00000098221' => 'predicted gene, 27030'
)
$gene_name_arr = array(
'ENSG00000103264' => 'FBXO31',
'ENSG00000104731' => 'KLHDC4',
'ENSG00000131152' => 'RP11-178L8.4',
'ENSG00000140941' => 'MAP1LC3B',
'ENSG00000140948' => 'ZCCHC14',
'ENSG00000154118' => 'JPH3',
'ENSG00000226180' => 'RP11-278A23.1',
'ENSG00000243705' => 'RP11-178L8.1',
'ENSG00000260177' => 'RP4-536B24.3',
'ENSG00000260456' => 'C16orf95',
'ENSG00000260498' => 'RP4-536B24.4',
'ENSG00000260671' => 'RP11-278A23.2',
'ENSG00000260750' => 'RP11-482M8.1',
'ENSG00000261095' => 'RP11-899L11.1',
'ENSG00000261592' => 'RP11-178L8.3',
'ENSG00000261651' => 'RP11-899L11.3',
'ENSG00000261697' => 'RP11-178L8.5',
'ENSG00000269901' => 'RP11-178L8.9',
'ENSG00000269935' => 'RP11-482M8.3',
'ENSG00000270006' => 'RP11-178L8.7',
'ENSG00000270082' => 'RP11-178L8.8',
'ENSG00000276337' => 'RP11-106D4.2',
'ENSG00000276393' => 'RP11-106D4.3',
'ENSG00000277504' => 'RP11-278A23.4',
'ENSG00000280419' => 'RP11-178L8.6',
'ENSMUSG00000025316' => 'Banp',
'ENSMUSG00000025317' => 'Car5a',
'ENSMUSG00000025318' => 'Jph3',
'ENSMUSG00000031809' => '1700018B08Rik',
'ENSMUSG00000031812' => 'Map1lc3b',
'ENSMUSG00000040010' => 'Slc7a5',
'ENSMUSG00000040263' => 'Klhdc4',
'ENSMUSG00000052934' => 'Fbxo31',
'ENSMUSG00000061410' => 'Zcchc14',
'ENSMUSG00000064642' => 'Gm23299',
'ENSMUSG00000074052' => 'BC048644',
'ENSMUSG00000077421' => 'Gm24283',
'ENSMUSG00000092418' => 'Gm20406',
'ENSMUSG00000097424' => '1700030M09Rik',
'ENSMUSG00000097438' => 'Gm26784',
'ENSMUSG00000097783' => 'Gm26747',
'ENSMUSG00000097812' => 'Gm26812',
'ENSMUSG00000097969' => 'Gm26999',
'ENSMUSG00000097987' => 'Gm17786',
'ENSMUSG00000098109' => '9530085P06Rik',
'ENSMUSG00000098184' => 'Gm27011',
'ENSMUSG00000098211' => 'Gm27045',
'ENSMUSG00000098221' => 'Gm27030'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008WG_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '87215497',
'seq_end' => '87815964',
'region_length' => '600467',
'region_type' => 'VISTA',
'el_id' => 'mm338'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0008WG_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121365198',
'seq_end' => '121966118',
'region_length' => '600920',
'region_type' => 'VISTA',
'el_id' => 'mm338'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 39 => 'Brain',
(int) 55 => 'Breast',
(int) 67 => 'Colon',
(int) 80 => 'Heart',
(int) 97 => 'Kidney',
(int) 112 => 'Liver',
(int) 130 => 'Lung',
(int) 141 => 'Muscle',
(int) 154 => 'Ovary',
(int) 170 => 'Placenta',
(int) 184 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 153
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000311635' => array(
'start' => '87326987',
'end' => '87383757',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-001'
),
'ENST00000561664' => array(
'start' => '87343746',
'end' => '87367508',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-005'
),
'ENST00000563113' => array(
'start' => '87335348',
'end' => '87389850',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-006'
),
'ENST00000563956' => array(
'start' => '87367745',
'end' => '87383751',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-004'
),
'ENST00000565593' => array(
'start' => '87329336',
'end' => '87383763',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FBXO31-002'
),
'ENST00000567622' => array(
'start' => '87386011',
'end' => '87392142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-007'
),
'ENST00000569412' => array(
'start' => '87367652',
'end' => '87392107',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FBXO31-008'
),
'ENST00000618298' => array(
'start' => '87326987',
'end' => '87392107',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FBXO31-201'
),
'ENST00000270583' => array(
'start' => '87707813',
'end' => '87765949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KLHDC4-001'
),
'ENST00000316853' => array(
'start' => '87707812',
'end' => '87750942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KLHDC4-008'
),
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'transcript_name' => 'Klhdc4-008'
),
'ENSMUST00000172954' => array(
'start' => '121799485',
'end' => '121801599',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-009'
),
'ENSMUST00000174192' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-005'
),
'ENSMUST00000174206' => array(
'start' => '121796344',
'end' => '121797428',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-010'
),
'ENSMUST00000174255' => array(
'start' => '121821303',
'end' => '121829504',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Klhdc4-006'
),
'ENSMUST00000174665' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Klhdc4-004'
),
'ENSMUST00000174709' => array(
'start' => '121796333',
'end' => '121829540',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Klhdc4-002'
),
'ENSMUST00000174717' => array(
'start' => '121796547',
'end' => '121829480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Klhdc4-003'
),
'ENSMUST00000059018' => array(
'start' => '121549440',
'end' => '121578806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fbxo31-001'
),
'ENSMUST00000180539' => array(
'start' => '121555623',
'end' => '121559963',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fbxo31-003'
),
'ENSMUST00000180979' => array(
'start' => '121553999',
'end' => '121559099',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fbxo31-004'
),
'ENSMUST00000181663' => array(
'start' => '121564331',
'end' => '121578790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fbxo31-002'
),
'ENSMUST00000046386' => array(
'start' => '121598703',
'end' => '121652901',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zcchc14-001'
),
'ENSMUST00000134212' => array(
'start' => '121608585',
'end' => '121628610',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zcchc14-003'
),
'ENSMUST00000139379' => array(
'start' => '121606214',
'end' => '121607218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Zcchc14-004'
),
'ENSMUST00000154725' => array(
'start' => '121600350',
'end' => '121604514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zcchc14-002'
),
'ENSMUST00000082708' => array(
'start' => '121666628',
'end' => '121666706',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23299-201'
),
'ENSMUST00000140928' => array(
'start' => '121907833',
'end' => '121918428',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-001'
),
'ENSMUST00000181944' => array(
'start' => '121907833',
'end' => '121909824',
'transcript_biotype' => 'antisense',
'transcript_name' => 'BC048644-002'
),
'ENSMUST00000104233' => array(
'start' => '121830436',
'end' => '121830542',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm24283-201'
),
'ENSMUST00000173993' => array(
'start' => '121806415',
'end' => '121807369',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm20406-001'
),
'ENSMUST00000181133' => array(
'start' => '121544382',
'end' => '121548342',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-002'
),
'ENSMUST00000181679' => array(
'start' => '121544388',
'end' => '121547652',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '1700030M09Rik-001'
),
'ENSMUST00000181666' => array(
'start' => '121434980',
'end' => '121435389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26784-001'
),
'ENSMUST00000180597' => array(
'start' => '121421345',
'end' => '121427188',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26747-001'
),
'ENSMUST00000181647' => array(
'start' => '121851883',
'end' => '121860325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-002'
),
'ENSMUST00000181776' => array(
'start' => '121850194',
'end' => '121860621',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26812-001'
),
'ENSMUST00000183009' => array(
'start' => '121919024',
'end' => '121919690',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26999-001'
),
'ENSMUST00000182000' => array(
'start' => '121581765',
'end' => '121582191',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm17786-001'
),
'ENSMUST00000182121' => array(
'start' => '121856777',
'end' => '121857603',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '9530085P06Rik-001'
),
'ENSMUST00000182352' => array(
'start' => '121949674',
'end' => '121950645',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27011-001'
),
'ENSMUST00000182145' => array(
'start' => '121542122',
'end' => '121543481',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27045-001'
),
'ENSMUST00000182551' => array(
'start' => '121654054',
'end' => '121654517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm27030-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0008WG_0001' => array(
'genes_in_region' => array(
'ENSG00000103264' => array(
[maximum depth reached]
),
'ENSG00000104731' => array(
[maximum depth reached]
),
'ENSG00000140941' => array(
[maximum depth reached]
),
'ENSG00000140948' => array(
[maximum depth reached]
),
'ENSG00000154118' => array(
[maximum depth reached]
),
'ENSG00000226180' => array(
[maximum depth reached]
),
'ENSG00000243705' => array(
[maximum depth reached]
),
'ENSG00000260177' => array(
[maximum depth reached]
),
'ENSG00000260498' => array(
[maximum depth reached]
),
'ENSG00000260671' => array(
[maximum depth reached]
),
'ENSG00000260750' => array(
[maximum depth reached]
),
'ENSG00000261095' => array(
[maximum depth reached]
),
'ENSG00000261592' => array(
[maximum depth reached]
),
'ENSG00000261651' => array(
[maximum depth reached]
),
'ENSG00000261697' => array(
[maximum depth reached]
),
'ENSG00000270006' => array(
[maximum depth reached]
),
'ENSG00000276337' => array(
[maximum depth reached]
),
'ENSG00000276393' => array(
[maximum depth reached]
),
'ENSG00000280419' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Adipose',
(int) 31 => 'Heart',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Kidney',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Heart',
(int) 40 => 'Liver',
(int) 41 => 'Adrenal',
(int) 42 => 'Bladder',
(int) 43 => 'Breast',
(int) 44 => 'Heart',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Muscle',
(int) 48 => 'Ovary',
(int) 49 => 'Placenta',
(int) 50 => 'Testis',
(int) 51 => 'Colon',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Adrenal',
(int) 55 => 'Liver',
(int) 56 => 'Placenta',
(int) 57 => 'Testis',
(int) 58 => 'Muscle',
(int) 59 => 'Muscle',
(int) 60 => 'Heart',
(int) 61 => 'Liver',
(int) 62 => 'Adipose',
(int) 63 => 'Adrenal',
(int) 64 => 'Bladder',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Testis',
(int) 77 => 'Adipose',
(int) 78 => 'Adrenal',
(int) 79 => 'Bladder',
(int) 80 => 'Brain',
(int) 81 => 'Breast',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Kidney',
(int) 85 => 'Liver',
(int) 86 => 'Lung',
(int) 87 => 'Muscle',
(int) 88 => 'Ovary',
(int) 89 => 'Placenta',
(int) 90 => 'Testis',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Lung',
(int) 94 => 'Muscle',
(int) 95 => 'Placenta',
(int) 96 => 'Brain',
(int) 97 => 'Colon',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Breast',
(int) 116 => 'Adipose',
(int) 117 => 'Adrenal',
(int) 118 => 'Brain',
(int) 119 => 'Heart',
(int) 120 => 'Kidney',
(int) 121 => 'Muscle',
(int) 122 => 'Placenta',
(int) 123 => 'Testis',
(int) 124 => 'Testis',
(int) 125 => 'Brain',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adrenal',
(int) 132 => 'Brain',
(int) 133 => 'Breast',
(int) 134 => 'Heart',
(int) 135 => 'Kidney',
(int) 136 => 'Liver',
(int) 137 => 'Muscle',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Kidney',
(int) 143 => 'Liver',
(int) 144 => 'Lung',
(int) 145 => 'Testis',
(int) 146 => 'Kidney',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Brain',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Ovary',
(int) 154 => 'Testis',
(int) 155 => 'Ovary',
(int) 156 => 'Testis',
(int) 157 => 'Adipose',
(int) 158 => 'Adrenal',
(int) 159 => 'Brain',
(int) 160 => 'Breast',
(int) 161 => 'Colon',
(int) 162 => 'Heart',
(int) 163 => 'Kidney',
(int) 164 => 'Liver',
(int) 165 => 'Lung',
(int) 166 => 'Muscle',
(int) 167 => 'Ovary',
(int) 168 => 'Testis',
(int) 169 => 'Brain',
(int) 170 => 'Testis',
(int) 171 => 'Brain',
(int) 172 => 'Lung',
(int) 173 => 'Testis',
(int) 174 => 'Adipose',
(int) 175 => 'Brain',
(int) 176 => 'Liver',
(int) 177 => 'Testis',
(int) 178 => 'Adrenal',
(int) 179 => 'Testis',
(int) 180 => 'Adipose',
(int) 181 => 'Adrenal',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Liver',
(int) 187 => 'Lung',
(int) 188 => 'Ovary',
(int) 189 => 'Placenta',
(int) 190 => 'Testis',
(int) 191 => 'Adipose',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Breast',
(int) 196 => 'Colon',
(int) 197 => 'Heart',
(int) 198 => 'Kidney',
(int) 199 => 'Liver',
(int) 200 => 'Lung',
(int) 201 => 'Muscle',
(int) 202 => 'Ovary',
(int) 203 => 'Placenta',
(int) 204 => 'Testis',
(int) 205 => 'Adrenal',
(int) 206 => 'Colon',
(int) 207 => 'Heart',
(int) 208 => 'Ovary',
(int) 209 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0008WG_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '121365198',
'seq_end' => '121966118',
'region_length' => '600920',
'region_type' => 'VISTA',
'el_id' => 'mm338'
)
)
$gene_el = array(
'ENST00000623341' => array(
'Heart' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.055',
'stddev_FPKM' => '0.02'
)
)
)
$gene_key = 'ENSG00000280419'
$is_first = false
$tran_el = array(
'Heart' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.129',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.055',
'stddev_FPKM' => '0.02'
)
)
$tran_key = 'ENST00000623341'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| mm338 |
VISTA |
10090 |
8:121365198-121966118  |
| Gene | Transcript | Position | Biotype |
|---|
(FBXO31)