C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription factor 25 (basic helix-loop-helix)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141002 TCF25 9606 + 16:89873586-89911384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263346 TCF25-001 89873612-89911384 protein_coding
  ENST00000263347 TCF25-201 89873586-89911384 protein_coding
  ENST00000561585 TCF25-002 89873592-89884063 retained_intron
  ENST00000561958 TCF25-012 89873606-89893767 protein_coding
  ENST00000562184 TCF25-017 89894956-89900793 retained_intron
  ENST00000562193 TCF25-023 89898601-89904975 protein_coding
  ENST00000562256 TCF25-004 89884644-89911384 protein_coding
  ENST00000563032 TCF25-009 89873643-89874855 processed_transcript
  ENST00000563406 TCF25-010 89874550-89884613 processed_transcript
  ENST00000563484 TCF25-021 89905009-89909174 retained_intron
  ENST00000563636 TCF25-018 89895115-89901039 retained_intron
  ENST00000564652 TCF25-008 89873644-89892247 nonsense_mediated_decay
  ENST00000564957 TCF25-024 89909840-89911379 processed_transcript
  ENST00000565196 TCF25-011 89873644-89892275 protein_coding
  ENST00000565404 TCF25-013 89883394-89886130 protein_coding
  ENST00000565860 TCF25-026 89910293-89911379 processed_transcript
  ENST00000566158 TCF25-019 89895990-89898835 retained_intron
  ENST00000566283 TCF25-025 89908966-89911379 protein_coding
  ENST00000566751 TCF25-015 89884642-89895137 processed_transcript
  ENST00000567171 TCF25-007 89909428-89911378 retained_intron
  ENST00000568409 TCF25-016 89887649-89904183 protein_coding
  ENST00000568412 TCF25-014 89873668-89896083 protein_coding
  ENST00000568870 TCF25-020 89892193-89893907 retained_intron
  ENST00000570116 TCF25-005 89895990-89911350 retained_intron
  ENST00000614813 TCF25-027 89873641-89890633 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263346ENST00000263347ENST00000561958ENST00000562256ENST00000565196ENST00000565404ENST00000568412
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263346 46.143±0.00 56.031±0.00 N/A 32.502±23.07 51.269±0.00 13.994±9.54 12.697±11.73 17.130±13.61 11.167±7.96 49.309±0.00 44.566±0.00 42.471±39.56 57.591±12.08 47.123±7.52
ENST00000263347 N/A N/A N/A N/A N/A N/A 0.750±0.00 N/A N/A 2.367±0.00 N/A N/A N/A N/A
ENST00000561958 N/A N/A N/A N/A N/A N/A 2.819±0.00 N/A 13.869±0.00 5.764±0.00 N/A 3.996±0.00 N/A N/A
ENST00000562256 N/A N/A N/A N/A N/A 14.630±0.00 N/A 16.324±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565196 N/A N/A 22.641±0.00 15.855±0.00 4.755±0.00 23.923±0.00 1.415±0.00 15.987±0.00 3.888±0.00 15.205±0.00 8.042±0.00 7.348±0.40 35.656±0.00 72.323±0.00
ENST00000565404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.837±0.00 N/A
ENST00000568412 N/A N/A N/A N/A 7.102±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005J CIL_00005J_0001 CGP 16:89818179-89911384
CIL_0006AO CIL_0006AO_0002 CGP 16:89873586-89920977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007507 NAS heart development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040861 tcf25 transcription factor 25 (basic helix-loop-helix) protein_coding Danio_rerio
ENSMUSG00000001472 Tcf25 transcription factor 25 (basic helix-loop-helix) protein_coding Mus_musculus

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