C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: galactosamine (N-acetyl)-6-sulfatase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141012 GALNS 9606 - 16:88813734-88856970 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268695 GALNS-001 88813734-88856966 protein_coding
  ENST00000561812 GALNS-010 88836241-88838922 processed_transcript
  ENST00000562593 GALNS-004 88813735-88845624 retained_intron
  ENST00000562831 GALNS-009 88835755-88856575 protein_coding
  ENST00000562931 GALNS-012 88832034-88837849 processed_transcript
  ENST00000564263 GALNS-013 88824789-88827116 retained_intron
  ENST00000565364 GALNS-003 88840335-88856842 processed_transcript
  ENST00000566563 GALNS-011 88835729-88837889 retained_intron
  ENST00000567525 GALNS-006 88813736-88856826 nonsense_mediated_decay
  ENST00000567779 GALNS-007 88840698-88842045 retained_intron
  ENST00000568311 GALNS-002 88855128-88856970 protein_coding
  ENST00000568613 GALNS-005 88814323-88856826 nonsense_mediated_decay
  ENST00000569433 GALNS-008 88855753-88856931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268695ENST00000562593ENST00000562931ENST00000566563ENST00000567525ENST00000568613
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268695 N/A 4.486±0.00 1.782±0.00 3.227±0.00 2.475±1.73 2.583±0.00 2.980±0.00 3.136±1.73 2.927±0.00 4.420±3.61 3.488±0.00 9.286±5.96 10.098±2.31 11.120±0.00
ENST00000562593 N/A N/A 0.896±0.00 N/A N/A 0.332±0.00 N/A 0.396±0.00 0.379±0.00 0.451±0.00 N/A 0.388±0.00 N/A N/A
ENST00000562931 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.089±0.00 N/A N/A N/A N/A
ENST00000566563 N/A N/A N/A N/A N/A N/A N/A 4.216±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567525 3.874±0.00 6.072±0.00 N/A N/A 4.504±0.00 4.668±0.00 0.309±0.00 5.069±0.00 3.626±0.00 5.945±0.00 N/A 7.649±0.00 N/A 8.515±0.00
ENST00000568613 N/A N/A N/A N/A N/A N/A N/A N/A 0.632±0.00 N/A N/A 0.891±0.00 N/A 15.336±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0006AL CIL_0006AL_0002 CGP 16:88809339-88856970
CIL_000330 CIL_000330_0001 CGP 16:88813734-88862686

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003943 TAS N-acetylgalactosamine-4-sulfatase activity
GO:0005975 TAS carbohydrate metabolic process
GO:0008152 IEA metabolic process
GO:0008484 IDA:IEA sulfuric ester hydrolase activity
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0042339 TAS keratan sulfate metabolic process
GO:0042340 TAS keratan sulfate catabolic process
GO:0043202 TAS lysosomal lumen
GO:0043890 IEA N-acetylgalactosamine-6-sulfatase activity
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051853 galns galactosamine (N-acetyl)-6-sulfate sulfatase protein_coding Danio_rerio
ENSMUSG00000015027 Galns galactosamine (N-acetyl)-6-sulfate sulfatase protein_coding Mus_musculus

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