C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cirrhosis, autosomal recessive 1A (cirhin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141076 CIRH1A 9606 + 16:69131291-69231130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314423 CIRH1A-001 69132515-69169021 protein_coding
  ENST00000352319 CIRH1A-003 69132650-69169020 protein_coding
  ENST00000562237 CIRH1A-004 69132596-69169020 protein_coding
  ENST00000563094 CIRH1A-002 69132658-69167842 protein_coding
  ENST00000563299 CIRH1A-006 69131291-69139903 protein_coding
  ENST00000564408 CIRH1A-014 69139672-69150634 retained_intron
  ENST00000566227 CIRH1A-010 69132646-69143389 protein_coding
  ENST00000567015 CIRH1A-011 69133511-69143300 retained_intron
  ENST00000567235 CIRH1A-007 69132873-69139832 protein_coding
  ENST00000567287 CIRH1A-017 69167104-69231130 processed_transcript
  ENST00000567460 CIRH1A-009 69132613-69143328 protein_coding
  ENST00000567500 CIRH1A-016 69154422-69169038 protein_coding
  ENST00000568448 CIRH1A-008 69132884-69139873 protein_coding
  ENST00000569014 CIRH1A-013 69139012-69150702 processed_transcript
  ENST00000569615 CIRH1A-015 69142116-69150818 processed_transcript
  ENST00000569800 CIRH1A-012 69132663-69138026 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314423ENST00000562237
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314423 12.618±0.00 N/A 12.051±0.00 7.224±5.62 8.982±5.78 4.818±4.19 13.815±0.00 2.970±1.05 2.155±0.00 20.965±0.00 13.880±8.05 7.446±0.00 21.731±9.32
ENST00000562237 N/A 10.990±0.00 N/A 1.407±0.00 N/A N/A 2.477±0.00 6.025±0.00 5.075±0.00 13.304±9.17 7.447±3.23 10.623±1.70 21.136±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I7 CIL_0004I7_0001 CGP 16:69105564-69132584
CIL_0004CT CIL_0004CT_0001 CGP 16:69118010-69231130
CIL_0004I5 CIL_0004I5_0001 CGP 16:69131291-69309052

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0030490 IMP maturation of SSU-rRNA
GO:0034455 IDA t-UTP complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017675 cirh1a cirrhosis, autosomal recessive 1A (cirhin) protein_coding Danio_rerio
ENSMUSG00000041438 Cirh1a cirrhosis, autosomal recessive 1A (human) protein_coding Mus_musculus

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