C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cirrhosis, autosomal recessive 1A (cirhin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314423 CIRH1A-001 ENSG00000141076 9606 + 16:69132515-69169021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314423
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314423 12.618±0.00 12.051±0.00 7.224±5.62 8.982±5.78 4.818±4.19 13.815±0.00 2.970±1.05 2.155±0.00 20.965±0.00 13.880±8.05 7.446±0.00 21.731±9.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I7 CIL_0004I7_0001 CGP 16:69105564-69132584
CIL_0004CT CIL_0004CT_0001 CGP 16:69118010-69231130
CIL_0004I5 CIL_0004I5_0001 CGP 16:69131291-69309052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0030490 IMP maturation of SSU-rRNA
GO:0034455 IDA t-UTP complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047629 Cirh1a-201 protein_coding Mus_musculus 0 2549

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