C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: target of myb1 (chicken)-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141198 TOM1L1 9606 + 17:54899387-54961956 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348161 TOM1L1-005 54900806-54961722 protein_coding
  ENST00000445275 TOM1L1-002 54900752-54961949 protein_coding
  ENST00000536554 TOM1L1-008 54900853-54961475 protein_coding
  ENST00000570371 TOM1L1-022 54899387-54937316 protein_coding
  ENST00000570499 TOM1L1-013 54900870-54915847 protein_coding
  ENST00000570623 TOM1L1-018 54936413-54937484 retained_intron
  ENST00000570965 TOM1L1-010 54900722-54930206 nonsense_mediated_decay
  ENST00000570977 TOM1L1-017 54913819-54930379 retained_intron
  ENST00000571319 TOM1L1-006 54900853-54961497 nonsense_mediated_decay
  ENST00000572158 TOM1L1-007 54900836-54961314 protein_coding
  ENST00000572298 TOM1L1-011 54900853-54914691 protein_coding
  ENST00000572360 TOM1L1-012 54900863-54914705 nonsense_mediated_decay
  ENST00000572405 TOM1L1-004 54900834-54917452 protein_coding
  ENST00000572576 TOM1L1-014 54900877-54936709 protein_coding
  ENST00000572905 TOM1L1-021 54938577-54947353 retained_intron
  ENST00000573607 TOM1L1-015 54901103-54913846 protein_coding
  ENST00000574318 TOM1L1-023 54938924-54959494 protein_coding
  ENST00000574653 TOM1L1-019 54938781-54961413 retained_intron
  ENST00000574744 TOM1L1-020 54899802-54900509 processed_transcript
  ENST00000575333 TOM1L1-009 54900857-54938033 protein_coding
  ENST00000575882 TOM1L1-001 54900513-54961956 protein_coding
  ENST00000575909 TOM1L1-016 54901134-54915860 protein_coding
  ENST00000576932 TOM1L1-003 54900834-54947311 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000536554ENST00000570977ENST00000572158ENST00000575333ENST00000576932
Transcript ID Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000536554 N/A N/A N/A N/A N/A N/A 4.139±0.00 1.894±0.00 N/A
ENST00000570977 N/A N/A N/A N/A N/A N/A 13.975±0.00 N/A 18.551±0.00
ENST00000572158 12.888±0.00 4.957±0.58 10.123±0.00 22.271±1.49 16.515±0.00 6.221±0.30 6.809±2.66 N/A 8.127±0.00
ENST00000575333 N/A N/A N/A N/A N/A N/A 3.781±0.00 N/A N/A
ENST00000576932 N/A N/A N/A 14.308±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005764 TAS lysosome
GO:0005768 IDA endosome
GO:0005794 IEA Golgi apparatus
GO:0005829 IDA cytosol
GO:0006886 IEA intracellular protein transport
GO:0007165 IDA signal transduction
GO:0016020 IEA membrane
GO:0017124 IEA SH3 domain binding
GO:0019901 IPI protein kinase binding
GO:0030276 IDA clathrin binding
GO:0030295 IEA protein kinase activator activity
GO:0031954 IDA positive regulation of protein autophosphorylation
GO:0032147 IDA activation of protein kinase activity
GO:0043130 TAS ubiquitin binding
GO:0043162 NAS ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0045839 IDA negative regulation of mitosis
GO:0045860 IEA positive regulation of protein kinase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020541 Tom1l1 target of myb1-like 1 (chicken) protein_coding Mus_musculus

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