C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141338 ABCA8 9606 - 17:68867292-68955392 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269080 ABCA8-001 68867292-68955351 protein_coding
  ENST00000428549 ABCA8-008 68931762-68955351 retained_intron
  ENST00000430352 ABCA8-201 68867292-68955392 protein_coding
  ENST00000541225 ABCA8-005 68886800-68955325 retained_intron
  ENST00000585531 ABCA8-009 68937071-68944874 protein_coding
  ENST00000585850 ABCA8-007 68931762-68955392 retained_intron
  ENST00000586292 ABCA8-013 68876680-68884597 retained_intron
  ENST00000586539 ABCA8-003 68868052-68955241 protein_coding
  ENST00000587206 ABCA8-010 68918078-68919997 retained_intron
  ENST00000588458 ABCA8-014 68876314-68877646 retained_intron
  ENST00000589533 ABCA8-004 68894045-68929115 non_stop_decay
  ENST00000589980 ABCA8-012 68880779-68882605 retained_intron
  ENST00000590359 ABCA8-011 68894784-68903427 retained_intron
  ENST00000591459 ABCA8-006 68877197-68880267 retained_intron
  ENST00000615593 ABCA8-202 68894047-68955383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269080ENST00000430352ENST00000541225ENST00000585850ENST00000586292ENST00000586539ENST00000591459ENST00000615593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269080 N/A 0.938±0.00 N/A 2.406±0.00 4.634±0.00 2.374±0.42 2.857±0.00 1.599±1.38 2.026±0.00 2.118±0.94 N/A 3.472±0.87 0.429±0.18 N/A
ENST00000430352 N/A N/A N/A 1.901±0.46 N/A 5.494±0.00 2.303±0.22 0.790±0.00 N/A N/A N/A 2.523±0.07 N/A N/A
ENST00000541225 N/A N/A 1.067±0.00 4.793±0.00 N/A 3.110±0.00 N/A N/A 4.281±0.00 4.715±0.00 1.709±0.00 2.204±0.00 N/A N/A
ENST00000585850 N/A N/A N/A N/A N/A 5.358±0.00 8.432±0.00 N/A N/A N/A N/A 6.657±0.00 N/A N/A
ENST00000586292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.669±0.00 N/A 8.045±0.00
ENST00000586539 4.713±0.00 0.897±0.00 0.912±0.00 1.650±0.00 3.819±0.00 4.636±2.54 2.708±1.00 3.536±0.00 2.266±1.94 2.645±0.06 0.368±0.00 2.992±0.37 0.736±0.00 N/A
ENST00000591459 N/A N/A N/A 2.431±0.00 N/A N/A N/A N/A 0.514±0.00 N/A N/A N/A 0.597±0.00 2.766±0.00
ENST00000615593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.130±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005743 IEA mitochondrial inner membrane
GO:0005886 TAS plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 IDA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0042626 IDA ATPase activity, coupled to transmembrane movement of substances
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020620 Abca8b ATP-binding cassette, sub-family A (ABC1), member 8b protein_coding Mus_musculus

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