C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leprecan-like 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141696 LEPREL4 9606 - 17:41801947-41812604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355468 LEPREL4-001 41801947-41812603 protein_coding
  ENST00000393928 LEPREL4-201 41801954-41812199 protein_coding
  ENST00000465097 LEPREL4-002 41802320-41806848 nonsense_mediated_decay
  ENST00000467164 LEPREL4-004 41810681-41811669 retained_intron
  ENST00000484247 LEPREL4-003 41801954-41807490 retained_intron
  ENST00000587455 LEPREL4-005 41806825-41811160 retained_intron
  ENST00000590496 LEPREL4-007 41811661-41812604 protein_coding
  ENST00000592026 LEPREL4-006 41806796-41811560 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355468ENST00000393928ENST00000465097ENST00000467164ENST00000484247ENST00000590496ENST00000592026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355468 0.342±0.00 N/A N/A N/A 0.444±0.00 0.421±0.00 N/A 1.668±0.00 N/A N/A N/A 5.701±4.55 N/A 0.919±0.00
ENST00000393928 0.756±0.00 4.118±0.00 N/A 0.110±0.00 1.938±0.00 1.557±0.00 N/A 3.127±0.00 0.292±0.00 N/A N/A 10.739±6.85 3.857±0.00 5.574±0.00
ENST00000465097 1.241±0.00 2.763±0.00 N/A N/A 2.523±0.00 1.896±0.00 0.701±0.00 N/A 0.353±0.00 1.349±0.00 1.347±0.89 43.736±0.00 13.057±0.00 2.494±0.00
ENST00000467164 N/A N/A 0.813±0.00 N/A 0.817±0.00 N/A N/A N/A 1.093±0.00 0.239±0.00 N/A N/A N/A N/A
ENST00000484247 N/A N/A 0.398±0.00 0.369±0.00 N/A N/A 0.202±0.00 0.307±0.00 0.262±0.00 N/A N/A N/A N/A N/A
ENST00000590496 N/A N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592026 1.680±0.00 N/A N/A N/A N/A N/A 1.617±0.00 N/A N/A 2.332±0.00 6.120±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NQ CIL_0005NQ_0001 CGP 17:41754604-41812604
CIL_0003K6 CIL_0003K6_0002 CGP 17:41801947-41823217

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000794 TAS condensed nuclear chromosome
GO:0000795 TAS synaptonemal complex
GO:0005730 TAS nucleolus
GO:0007130 TAS synaptonemal complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057946 leprel4 leprecan-like 4 protein_coding Danio_rerio
ENSMUSG00000006931 Leprel4 leprecan-like 4 protein_coding Mus_musculus

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