C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SCY1-like 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142186 SCYL1 9606 + 11:65525077-65538704 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270176 SCYL1-001 65525077-65538704 protein_coding
  ENST00000279270 SCYL1-201 65530639-65538701 protein_coding
  ENST00000420247 SCYL1-002 65525085-65538704 protein_coding
  ENST00000524897 SCYL1-009 65535131-65537123 retained_intron
  ENST00000524944 SCYL1-005 65525121-65538704 protein_coding
  ENST00000525364 SCYL1-014 65525077-65538704 protein_coding
  ENST00000526454 SCYL1-011 65535334-65536404 retained_intron
  ENST00000527009 SCYL1-003 65525413-65538675 protein_coding
  ENST00000528545 SCYL1-013 65536265-65538704 protein_coding
  ENST00000529178 SCYL1-008 65530767-65533258 retained_intron
  ENST00000529981 SCYL1-012 65535441-65536626 retained_intron
  ENST00000531601 SCYL1-010 65532748-65538008 nonsense_mediated_decay
  ENST00000532290 SCYL1-016 65537849-65538704 retained_intron
  ENST00000533862 SCYL1-006 65525112-65538704 protein_coding
  ENST00000534462 SCYL1-015 65537831-65538704 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270176ENST00000279270ENST00000420247ENST00000533862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270176 17.820±0.00 N/A N/A N/A N/A N/A 1.215±0.00 N/A N/A 22.760±0.00 N/A N/A 20.073±0.00 16.365±0.00
ENST00000279270 N/A N/A N/A N/A N/A N/A N/A N/A 11.892±0.00 N/A 37.554±0.00 N/A N/A N/A
ENST00000420247 13.760±0.00 23.557±0.00 3.350±0.00 17.092±7.46 12.012±8.12 2.426±0.00 8.475±6.06 16.099±10.32 10.927±6.52 3.831±0.00 16.764±9.05 31.432±23.35 38.690±6.93 42.649±22.97
ENST00000533862 N/A N/A N/A N/A N/A N/A N/A N/A 7.571±0.00 N/A 4.698±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004672 IEA protein kinase activity
GO:0004713 NAS protein tyrosine kinase activity
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0005801 IDA cis-Golgi network
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0006890 IDA retrograde vesicle-mediated transport, Golgi to ER
GO:0016020 IDA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018108 NAS peptidyl-tyrosine phosphorylation
GO:0030126 IDA COPI vesicle coat

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009017 SCYL1 (1 of 2) SCY1-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000079854 SCYL1 (2 of 2) SCY1-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000024941 Scyl1 SCY1-like 1 (S. cerevisiae) protein_coding Mus_musculus

Loading