C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SCY1-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420247 SCYL1-002 ENSG00000142186 9606 + 11:65525085-65538704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000420247
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000420247 13.760±0.00 23.557±0.00 3.350±0.00 17.092±7.46 12.012±8.12 2.426±0.00 8.475±6.06 16.099±10.32 10.927±6.52 3.831±0.00 16.764±9.05 31.432±23.35 38.690±6.93 42.649±22.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004672 IEA protein kinase activity
GO:0004713 NAS protein tyrosine kinase activity
GO:0005488 IEA binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0005801 IDA cis-Golgi network
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0006890 IDA retrograde vesicle-mediated transport, Golgi to ER
GO:0016020 IDA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018108 NAS peptidyl-tyrosine phosphorylation
GO:0030126 IDA COPI vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025890 Scyl1-201 protein_coding Mus_musculus 0 2338
ENSMUST00000081496 Ltbp3-201 protein_coding Mus_musculus 6e-24 117
ENSMUST00000147287 Npepps-007 retained_intron Mus_musculus 0.000001 60

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