C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphogluconate dehydrogenase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142657 PGD 9606 + 1:10398592-10420144 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270776 PGD-001 10399080-10420144 protein_coding
  ENST00000460189 PGD-008 10399632-10413251 protein_coding
  ENST00000465632 PGD-006 10399498-10408140 protein_coding
  ENST00000477958 PGD-005 10399073-10404276 nonsense_mediated_decay
  ENST00000483936 PGD-007 10399112-10417509 protein_coding
  ENST00000487775 PGD-004 10399044-10400008 retained_intron
  ENST00000491493 PGD-002 10398592-10411552 protein_coding
  ENST00000493288 PGD-010 10412834-10417044 retained_intron
  ENST00000496718 PGD-011 10418812-10419808 retained_intron
  ENST00000498356 PGD-009 10415292-10419830 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270776ENST00000465632ENST00000477958ENST00000483936
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270776 143.544±0.00 21.904±0.00 2.984±0.00 24.551±11.41 74.905±67.95 12.236±2.03 7.641±3.81 28.069±19.23 22.393±15.29 26.120±11.67 8.252±6.79 52.463±22.47 64.732±9.08 55.908±3.04
ENST00000465632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.522±0.00 N/A N/A N/A
ENST00000477958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 74.418±0.00 62.119±0.00 51.949±0.00
ENST00000483936 N/A N/A N/A N/A 5.283±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0001 VISTA 1:10233066-10834152
CIL_0007WE CIL_0007WE_0001 VISTA 1:10372013-10973061
CIL_00085P CIL_00085P_0001 VISTA 1:10397607-10998574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004616 IEA:ISS phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006098 IEA:ISS pentose-phosphate shunt
GO:0009051 IDA pentose-phosphate shunt, oxidative branch
GO:0019322 IEA pentose biosynthetic process
GO:0019521 IEA D-gluconate metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050661 IEA NADP binding
GO:0055114 IDA:IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015343 pgd phosphogluconate hydrogenase protein_coding Danio_rerio
ENSMUSG00000028961 Pgd phosphogluconate dehydrogenase protein_coding Mus_musculus

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