C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 1, group I, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143257 NR1I3 9606 - 1:161229666-161238302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367979 NR1I3-036 161229797-161236565 protein_coding
  ENST00000367980 NR1I3-201 161229671-161238210 protein_coding
  ENST00000367981 NR1I3-019 161229737-161238101 protein_coding
  ENST00000367982 NR1I3-002 161229690-161238163 protein_coding
  ENST00000367983 NR1I3-001 161229666-161238302 protein_coding
  ENST00000367984 NR1I3-011 161229772-161238111 protein_coding
  ENST00000367985 NR1I3-012 161229772-161238111 protein_coding
  ENST00000412844 NR1I3-030 161229682-161238101 protein_coding
  ENST00000428574 NR1I3-031 161229682-161238101 protein_coding
  ENST00000437437 NR1I3-025 161229671-161238101 protein_coding
  ENST00000442691 NR1I3-029 161229682-161238101 protein_coding
  ENST00000464422 NR1I3-005 161229671-161231219 processed_transcript
  ENST00000479324 NR1I3-006 161229680-161231329 processed_transcript
  ENST00000488651 NR1I3-004 161229670-161232862 processed_transcript
  ENST00000491193 NR1I3-003 161235257-161238133 retained_intron
  ENST00000502848 NR1I3-020 161229737-161238101 nonsense_mediated_decay
  ENST00000502985 NR1I3-016 161229737-161238101 protein_coding
  ENST00000503547 NR1I3-035 161231261-161238090 processed_transcript
  ENST00000504010 NR1I3-014 161229737-161238101 protein_coding
  ENST00000505005 NR1I3-032 161229682-161238101 protein_coding
  ENST00000505944 NR1I3-034 161230931-161238090 retained_intron
  ENST00000506018 NR1I3-010 161229690-161238163 nonsense_mediated_decay
  ENST00000506209 NR1I3-009 161230345-161238203 protein_coding
  ENST00000507215 NR1I3-023 161229737-161238101 nonsense_mediated_decay
  ENST00000508387 NR1I3-013 161229737-161238101 protein_coding
  ENST00000508740 NR1I3-033 161229682-161238101 protein_coding
  ENST00000510951 NR1I3-018 161229737-161238101 nonsense_mediated_decay
  ENST00000511676 NR1I3-015 161229737-161238101 protein_coding
  ENST00000511748 NR1I3-027 161229737-161238101 protein_coding
  ENST00000511944 NR1I3-026 161229737-161238101 protein_coding
  ENST00000512340 NR1I3-017 161229737-161238101 nonsense_mediated_decay
  ENST00000512372 NR1I3-024 161229666-161238101 protein_coding
  ENST00000515452 NR1I3-008 161231167-161238244 protein_coding
  ENST00000515621 NR1I3-021 161229737-161238101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryTestisENST00000367979ENST00000367980ENST00000367984ENST00000464422ENST00000479324ENST00000506209
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000367979 N/A N/A N/A N/A N/A 6.930±0.00 N/A N/A N/A N/A N/A
ENST00000367980 N/A N/A N/A N/A N/A 11.177±0.00 N/A N/A N/A N/A N/A
ENST00000367984 N/A N/A N/A N/A N/A N/A 9.686±0.00 N/A N/A N/A N/A
ENST00000464422 N/A N/A N/A N/A N/A N/A 26.602±0.00 N/A N/A N/A N/A
ENST00000479324 N/A N/A N/A N/A 1.785±0.00 N/A N/A N/A 2.698±0.00 N/A N/A
ENST00000506209 3.003±0.00 0.886±0.00 3.692±0.49 1.745±1.25 5.037±0.00 3.346±0.00 9.090±0.00 1.944±0.00 N/A 1.379±0.00 1.168±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 TAS DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004882 TAS androgen receptor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005515 IEA protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0030521 TAS androgen receptor signaling pathway
GO:0030522 TAS intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000005677 Nr1i3 nuclear receptor subfamily 1, group I, member 3 protein_coding Mus_musculus

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