C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 1, group I, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005677 Nr1i3 10090 + 1:171213970-171220701 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005820 Nr1i3-001 171213970-171218845 protein_coding
  ENSMUST00000075469 Nr1i3-002 171213971-171218843 protein_coding
  ENSMUST00000111328 Nr1i3-007 171214021-171218844 protein_coding
  ENSMUST00000133075 Nr1i3-005 171214002-171218845 nonsense_mediated_decay
  ENSMUST00000137298 Nr1i3-004 171213994-171219001 retained_intron
  ENSMUST00000149404 Nr1i3-008 171214349-171218718 retained_intron
  ENSMUST00000152865 Nr1i3-006 171214021-171219193 retained_intron
  ENSMUST00000155126 Nr1i3-003 171213986-171220701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000005820ENSMUST00000133075ENSMUST00000137298ENSMUST00000149404ENSMUST00000155126
Transcript ID Liver
ENSMUST00000005820 27.551±5.18
ENSMUST00000133075 24.432±2.90
ENSMUST00000137298 17.704±9.59
ENSMUST00000149404 30.692±2.39
ENSMUST00000155126 11.147±5.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000143257 NR1I3 nuclear receptor subfamily 1, group I, member 3 protein_coding Homo_sapiens

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