C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calsequestrin 1 (fast-twitch, skeletal muscle)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143318 CASQ1 9606 + 1:160190556-160201886 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368078 CASQ1-001 160190556-160201886 protein_coding
  ENST00000467691 CASQ1-003 160198210-160201493 protein_coding
  ENST00000481081 CASQ1-002 160192638-160199053 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000368078ENST00000467691ENST00000481081
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000368078 0.119±0.00 1.578±0.00 0.030±0.00 3.425±2.43 16.806±15.54 0.273±0.09 9.354±7.44 0.501±0.45 N/A 212.038±118.95 0.467±0.08 0.954±0.24 3.507±2.65
ENST00000467691 N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 0.383±0.00 N/A N/A N/A N/A
ENST00000481081 N/A N/A N/A N/A N/A N/A N/A N/A 0.160±0.11 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CV CIL_0000CV_0002 CGP 1:160190556-160215376

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0005783 NAS endoplasmic reticulum
GO:0005790 TAS smooth endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007029 IEA endoplasmic reticulum organization
GO:0007519 IEA skeletal muscle tissue development
GO:0009408 IEA response to heat
GO:0010033 IEA response to organic substance
GO:0010880 IEA regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014802 IEA terminal cisterna
GO:0014804 IEA terminal cisterna lumen
GO:0014809 ISS regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion
GO:0014870 IEA response to muscle inactivity
GO:0014894 IEA response to denervation involved in regulation of muscle adaptation
GO:0016529 ISS sarcoplasmic reticulum
GO:0030016 IEA myofibril
GO:0030315 IEA T-tubule
GO:0031674 IEA I band
GO:0033017 TAS sarcoplasmic reticulum membrane
GO:0033018 ISS sarcoplasmic reticulum lumen
GO:0034220 TAS ion transmembrane transport
GO:0042383 IEA sarcolemma
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045214 ISS sarcomere organization
GO:0051258 IDA protein polymerization
GO:0051282 IEA regulation of sequestering of calcium ion
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018105 casq1b calsequestrin 1b protein_coding Danio_rerio
ENSDARG00000038716 casq1a calsequestrin 1a protein_coding Danio_rerio
ENSMUSG00000007122 Casq1 calsequestrin 1 protein_coding Mus_musculus

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