C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: threonyl-tRNA synthetase 2, mitochondrial (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143374 TARS2 9606 + 1:150487364-150507609 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369051 TARS2-012 150487435-150507598 nonsense_mediated_decay
  ENST00000369053 TARS2-002 150487431-150489308 retained_intron
  ENST00000369054 TARS2-010 150487414-150507258 protein_coding
  ENST00000369064 TARS2-001 150487417-150507602 protein_coding
  ENST00000438568 TARS2-201 150487364-150507609 protein_coding
  ENST00000460794 TARS2-003 150491990-150497597 retained_intron
  ENST00000462578 TARS2-004 150492185-150497587 retained_intron
  ENST00000463555 TARS2-006 150491589-150504436 processed_transcript
  ENST00000466989 TARS2-007 150487991-150491718 retained_intron
  ENST00000467982 TARS2-008 150487870-150507183 nonsense_mediated_decay
  ENST00000479372 TARS2-011 150487442-150488632 retained_intron
  ENST00000480070 TARS2-005 150491458-150504436 processed_transcript
  ENST00000483046 TARS2-009 150504333-150506935 processed_transcript
  ENST00000606933 TARS2-013 150487420-150507284 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369051ENST00000369053ENST00000369054ENST00000369064ENST00000467982ENST00000480070ENST00000483046ENST00000606933
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369051 N/A N/A N/A N/A N/A N/A N/A N/A 2.573±0.00 1.333±0.00 N/A 7.440±0.00 7.032±0.00 4.482±2.29
ENST00000369053 N/A N/A N/A N/A 3.551±0.00 N/A N/A N/A N/A N/A N/A 1.951±0.00 N/A N/A
ENST00000369054 N/A N/A N/A 3.272±0.00 N/A 1.350±0.00 N/A 3.143±0.00 N/A N/A 1.858±0.41 4.762±3.27 N/A 6.890±0.00
ENST00000369064 0.841±0.00 N/A 0.530±0.00 3.319±0.76 1.911±0.71 0.879±0.36 3.720±0.00 3.451±2.19 2.888±1.98 1.292±0.58 2.253±0.13 3.471±2.03 6.634±0.59 6.255±0.60
ENST00000467982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.334±0.00 N/A N/A N/A
ENST00000480070 N/A N/A N/A N/A N/A 1.385±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483046 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.335±0.00 N/A N/A N/A N/A
ENST00000606933 2.632±0.00 2.723±0.00 1.029±0.00 1.791±0.89 2.109±0.00 0.657±0.00 2.029±1.31 2.342±0.00 0.606±0.00 N/A 3.726±0.00 3.533±0.00 3.348±1.07 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UE CIL_0000UE_0002 CGP 1:150363091-150507609

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004829 IEA threonine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006435 IEA threonyl-tRNA aminoacylation
GO:0008152 IEA metabolic process
GO:0010467 TAS gene expression
GO:0016876 IEA ligase activity, forming aminoacyl-tRNA and related compounds
GO:0043039 IEA tRNA aminoacylation
GO:0070159 TAS mitochondrial threonyl-tRNA aminoacylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075385 TARSL2 (1 of 2) threonyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Danio_rerio
ENSDARG00000089680 TARSL2 (2 of 2) threonyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Danio_rerio
ENSMUSG00000028107 Tars2 threonyl-tRNA synthetase 2, mitochondrial (putative) protein_coding Mus_musculus

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