C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143570 SLC39A1 9606 - 1:153959099-153968184 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310483 SLC39A1-003 153959112-153967712 protein_coding
  ENST00000356205 SLC39A1-001 153959099-153963572 protein_coding
  ENST00000368621 SLC39A1-004 153959111-153963462 protein_coding
  ENST00000368623 SLC39A1-002 153959110-153963475 protein_coding
  ENST00000413622 SLC39A1-005 153960353-153967621 protein_coding
  ENST00000417348 SLC39A1-008 153960454-153963262 protein_coding
  ENST00000429040 SLC39A1-006 153960110-153963322 protein_coding
  ENST00000461071 SLC39A1-007 153962311-153963139 processed_transcript
  ENST00000537590 SLC39A1-201 153959099-153963641 protein_coding
  ENST00000617697 SLC39A1-202 153959099-153968184 protein_coding
  ENST00000621013 SLC39A1-203 153959099-153963492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356205ENST00000537590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356205 69.975±0.00 68.507±0.00 54.699±0.00 18.219±2.96 35.214±6.30 39.115±10.48 14.966±8.00 57.015±19.99 33.104±1.39 66.831±40.48 30.182±3.88 99.509±55.58 129.515±12.89 30.962±13.38
ENST00000537590 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.235±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005385 IEA zinc ion transmembrane transporter activity
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006812 TAS cation transport
GO:0006829 IEA zinc ion transport
GO:0016020 IEA:TAS membrane
GO:0016021 IEA integral component of membrane
GO:0022890 TAS inorganic cation transmembrane transporter activity
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 TAS:IEA transmembrane transport
GO:0071577 IMP zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016145 slc39a3 solute carrier family 39 (zinc transporter), member 3 protein_coding Danio_rerio
ENSMUSG00000052310 Slc39a1 solute carrier family 39 (zinc transporter), member 1 protein_coding Mus_musculus

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