C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356205 SLC39A1-001 ENSG00000143570 9606 - 1:153959099-153963572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356205 69.975±0.00 68.507±0.00 54.699±0.00 18.219±2.96 35.214±6.30 39.115±10.48 14.966±8.00 57.015±19.99 33.104±1.39 66.831±40.48 30.182±3.88 99.509±55.58 129.515±12.89 30.962±13.38

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006812 TAS cation transport
GO:0016020 IEA:TAS membrane
GO:0016021 IEA integral component of membrane
GO:0022890 TAS inorganic cation transmembrane transporter activity
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 TAS:IEA transmembrane transport
GO:0071577 IMP zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015467 Slc39a1-001 protein_coding Mus_musculus 0 1327
ENSMUST00000120862 Slc39a1-ps-001 processed_pseudogene Mus_musculus 0 1044

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