C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144029 MRPS5 9606 - 2:95087207-95149434 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272418 MRPS5-001 95087207-95122000 protein_coding
  ENST00000345084 MRPS5-002 95087208-95121799 nonsense_mediated_decay
  ENST00000461916 MRPS5-007 95087324-95101953 retained_intron
  ENST00000464458 MRPS5-006 95104349-95106688 retained_intron
  ENST00000475040 MRPS5-005 95115122-95149434 processed_transcript
  ENST00000475895 MRPS5-003 95103753-95121813 retained_intron
  ENST00000482568 MRPS5-008 95087407-95106653 retained_intron
  ENST00000482821 MRPS5-004 95087208-95093691 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272418ENST00000475895ENST00000482821
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272418 15.474±0.00 19.393±0.00 3.363±0.00 13.634±7.10 21.025±0.00 11.884±9.82 7.862±5.02 14.472±9.79 18.925±15.48 12.254±8.82 17.698±14.50 42.949±34.37 24.882±6.35 41.065±0.74
ENST00000475895 N/A N/A 1.960±0.00 N/A N/A 2.277±0.00 N/A N/A N/A 1.793±0.00 N/A N/A N/A N/A
ENST00000482821 N/A 2.332±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I3 CIL_0004I3_0002 CGP 2:95025677-95149434

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062209 mrps5 mitochondrial ribosomal protein S5 protein_coding Danio_rerio
ENSMUSG00000027374 Mrps5 mitochondrial ribosomal protein S5 protein_coding Mus_musculus

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