C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 7 open reading frame 50
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146540 C7orf50 9606 - 7:996986-1138260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357429 C7orf50-001 996986-1138257 protein_coding
  ENST00000397098 C7orf50-002 997006-1138240 protein_coding
  ENST00000397100 C7orf50-201 996987-1138257 protein_coding
  ENST00000412051 C7orf50-003 997016-1028339 protein_coding
  ENST00000444428 C7orf50-005 997607-1055306 protein_coding
  ENST00000465681 C7orf50-004 1024502-1028352 retained_intron
  ENST00000488073 C7orf50-006 997494-1127388 processed_transcript
  ENST00000491163 C7orf50-007 997633-1138260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357429ENST00000397098ENST00000397100ENST00000412051ENST00000444428ENST00000465681ENST00000491163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357429 N/A N/A N/A N/A 1.394±0.00 1.136±0.00 N/A 6.945±0.00 2.587±0.00 N/A N/A 9.259±0.00 12.896±3.58 7.664±0.00
ENST00000397098 N/A N/A N/A 1.433±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397100 N/A N/A N/A 4.133±0.00 N/A N/A N/A N/A N/A 1.353±0.00 4.602±0.00 41.946±0.00 17.056±0.00 N/A
ENST00000412051 32.852±0.00 28.635±0.00 1.313±0.00 24.146±17.70 46.938±0.00 16.616±15.38 12.991±11.20 18.089±17.24 5.123±3.19 14.614±13.45 11.880±0.00 32.902±23.61 35.166±9.41 29.652±8.45
ENST00000444428 N/A N/A N/A N/A N/A N/A 1.213±0.00 N/A N/A N/A N/A N/A N/A 10.256±0.00
ENST00000465681 N/A N/A N/A N/A 0.871±0.00 N/A 0.266±0.00 N/A 0.709±0.00 N/A N/A N/A N/A N/A
ENST00000491163 N/A N/A N/A N/A N/A 1.598±0.00 N/A 1.269±0.00 N/A N/A N/A 31.960±28.86 41.749±0.00 21.001±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0001 VISTA 7:925518-1526682
CIL_0008DL CIL_0008DL_0001 VISTA 7:928196-1529533
CIL_0000ZU CIL_0000ZU_0001 CGP 7:983199-1138260
CIL_0000ZR CIL_0000ZR_0001 CGP 7:996986-1138260

Gene Ontology
GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045254 C24H7orf50 chromosome 7 open reading frame 50 protein_coding Danio_rerio
ENSMUSG00000053553 3110082I17Rik RIKEN cDNA 3110082I17 gene protein_coding Mus_musculus

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