C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: REX4, RNA exonuclease 4 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148300 REXO4 9606 - 9:133406059-133418096 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371935 REXO4-201 133406059-133418096 protein_coding
  ENST00000371942 REXO4-001 133406062-133418044 protein_coding
  ENST00000445916 REXO4-006 133412363-133415900 protein_coding
  ENST00000454825 REXO4-003 133407006-133417977 protein_coding
  ENST00000478037 REXO4-004 133412299-133417959 processed_transcript
  ENST00000494045 REXO4-005 133411004-133417954 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371942ENST00000445916ENST00000478037ENST00000494045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371942 7.076±0.00 3.854±0.00 0.840±0.00 2.654±1.50 4.237±2.81 8.670±7.07 3.008±2.47 5.123±3.68 3.713±1.88 2.958±1.36 9.666±9.00 7.967±5.49 11.490±1.77 12.076±4.33
ENST00000445916 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.837±0.00 N/A N/A N/A N/A
ENST00000478037 N/A N/A N/A N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494045 N/A N/A N/A N/A N/A N/A N/A N/A 1.503±0.00 N/A 0.425±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DD CIL_0006DD_0001 CGP 9:133361449-133406096
CIL_0000KH CIL_0000KH_0001 CGP 9:133376367-133418096
CIL_0006DF CIL_0006DF_0001 CGP 9:133406059-133459402

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004527 IEA exonuclease activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0044822 IDA poly(A) RNA binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088619 REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000052406 Rexo4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) protein_coding Mus_musculus

Loading