C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: REX4, RNA exonuclease 4 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052406 Rexo4 10090 - 2:26953563-26964386 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064244 Rexo4-001 26953563-26964386 protein_coding
  ENSMUST00000114020 Rexo4-201 26953566-26964386 protein_coding
  ENSMUST00000123126 Rexo4-006 26954326-26956586 processed_transcript
  ENSMUST00000128130 Rexo4-005 26958036-26960266 processed_transcript
  ENSMUST00000128401 Rexo4-004 26962879-26964324 processed_transcript
  ENSMUST00000135752 Rexo4-003 26956333-26964278 processed_transcript
  ENSMUST00000136710 Rexo4-002 26954541-26964279 protein_coding
  ENSMUST00000139635 Rexo4-007 26955001-26956319 processed_transcript
  ENSMUST00000145546 Rexo4-008 26954428-26955684 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064244ENSMUST00000114020ENSMUST00000123126ENSMUST00000136710
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064244 N/A 1.202±0.00 3.757±0.00 4.388±1.89 N/A 1.572±0.11 N/A 1.793±0.00 3.208±2.97 4.195±0.00 4.559±0.00 5.694±5.30 4.847±3.02 1.705±0.00
ENSMUST00000114020 4.944±1.04 1.208±0.00 7.659±0.04 5.969±1.02 2.923±0.85 2.164±0.44 0.698±0.06 4.244±2.02 5.526±3.55 3.375±0.82 5.585±0.66 6.312±4.11 10.541±4.27 2.595±0.87
ENSMUST00000123126 N/A 4.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.542±0.00 N/A N/A
ENSMUST00000136710 N/A N/A N/A 31.279±0.00 N/A N/A N/A N/A N/A N/A N/A 11.894±5.40 17.677±4.96 7.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KH CIL_0000KH_0002 CGP 2:26934047-26964386
CIL_0006DF CIL_0006DF_0002 CGP 2:26953563-27009628

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088619 REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000148300 REXO4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) protein_coding Homo_sapiens

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