C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 11 open reading frame 49
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149179 C11orf49 9606 + 11:46936689-47164385 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000278460 C11orf49-002 46936747-47162228 protein_coding
  ENST00000378615 C11orf49-007 46936778-47162247 protein_coding
  ENST00000378618 C11orf49-003 46936754-47164385 protein_coding
  ENST00000395460 C11orf49-006 46936768-47162247 protein_coding
  ENST00000522712 C11orf49-016 46936745-47053002 retained_intron
  ENST00000525279 C11orf49-012 46936730-47155238 nonsense_mediated_decay
  ENST00000525895 C11orf49-004 46936779-47162245 nonsense_mediated_decay
  ENST00000525953 C11orf49-019 47154395-47157979 processed_transcript
  ENST00000526424 C11orf49-009 46936779-47103811 nonsense_mediated_decay
  ENST00000526827 C11orf49-021 47052461-47159811 protein_coding
  ENST00000527234 C11orf49-018 46936748-47161203 processed_transcript
  ENST00000527268 C11orf49-015 47051923-47157922 processed_transcript
  ENST00000527667 C11orf49-011 46936780-47155209 nonsense_mediated_decay
  ENST00000527784 C11orf49-005 46936780-47161816 nonsense_mediated_decay
  ENST00000528488 C11orf49-001 46936697-47161911 nonsense_mediated_decay
  ENST00000529980 C11orf49-022 47137696-47155952 processed_transcript
  ENST00000531648 C11orf49-014 46936748-46987873 retained_intron
  ENST00000532633 C11orf49-013 46936778-47137512 nonsense_mediated_decay
  ENST00000532840 C11orf49-023 46936760-47138037 retained_intron
  ENST00000533124 C11orf49-010 46936689-47109318 processed_transcript
  ENST00000534249 C11orf49-017 47052454-47161190 nonsense_mediated_decay
  ENST00000534581 C11orf49-020 47154944-47161508 processed_transcript
  ENST00000624693 C11orf49-008 47160105-47162245 TEC

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLungOvaryPlacentaTestisENST00000278460ENST00000527234
Transcript ID Bladder Brain Lung Ovary Placenta Testis
ENST00000278460 N/A 15.794±7.36 10.090±0.00 17.351±4.84 9.846±0.88 13.269±0.00
ENST00000527234 13.637±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090616 C25H11orf49 chromosome 11 open reading frame 49 protein_coding Danio_rerio
ENSMUSG00000040591 1110051M20Rik RIKEN cDNA 1110051M20 gene protein_coding Mus_musculus

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