C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinal outer segment membrane protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149489 ROM1 9606 + 11:62611722-62615120 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000278833 ROM1-001 62612741-62615120 protein_coding
  ENST00000525801 ROM1-002 62611722-62614471 protein_coding
  ENST00000525947 ROM1-004 62613529-62614713 protein_coding
  ENST00000529273 ROM1-005 62612412-62612742 processed_transcript
  ENST00000534093 ROM1-003 62611786-62615100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartTestisENST00000278833ENST00000534093
Transcript ID Brain Heart Testis
ENST00000278833 6.819±5.66 N/A 3.605±0.00
ENST00000534093 14.786±0.00 0.192±0.00 5.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IEA photoreceptor outer segment
GO:0005887 TAS integral component of plasma membrane
GO:0007155 IEA cell adhesion
GO:0007601 IEA visual perception
GO:0010468 IEA regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0042622 IEA photoreceptor outer segment membrane
GO:0060042 IEA retina morphogenesis in camera-type eye
GO:0060219 IEA camera-type eye photoreceptor cell differentiation
GO:0061298 IEA retina vasculature development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019752 rom1a retinal outer segment membrane protein 1a protein_coding Danio_rerio
ENSDARG00000026926 rom1b retinal outer segment membrane protein 1b protein_coding Danio_rerio
ENSMUSG00000071648 Rom1 rod outer segment membrane protein 1 protein_coding Mus_musculus

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