C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC24 family member D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000150961 SEC24D 9606 - 4:118722823-118838683 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000280551 SEC24D-001 118722823-118836138 protein_coding
  ENST00000419654 SEC24D-201 118736552-118836171 protein_coding
  ENST00000502526 SEC24D-015 118738104-118739223 retained_intron
  ENST00000502830 SEC24D-014 118723521-118728847 retained_intron
  ENST00000503683 SEC24D-008 118815627-118836614 protein_coding
  ENST00000505134 SEC24D-006 118722830-118766563 processed_transcript
  ENST00000505280 SEC24D-010 118833277-118838653 processed_transcript
  ENST00000506622 SEC24D-005 118797683-118838683 nonsense_mediated_decay
  ENST00000509818 SEC24D-004 118752746-118838672 nonsense_mediated_decay
  ENST00000511033 SEC24D-013 118744074-118754120 processed_transcript
  ENST00000511481 SEC24D-002 118723024-118769840 protein_coding
  ENST00000511715 SEC24D-007 118729122-118733315 retained_intron
  ENST00000514418 SEC24D-012 118764413-118768247 retained_intron
  ENST00000514561 SEC24D-003 118736029-118838670 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000280551ENST00000419654ENST00000506622ENST00000509818ENST00000511481
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000280551 5.302±0.00 4.572±0.00 N/A 1.637±0.33 4.423±0.46 3.834±1.95 2.093±1.24 8.128±0.00 6.204±2.25 8.582±4.78 1.162±0.40 5.098±1.98 11.748±3.15 6.650±2.14
ENST00000419654 N/A N/A N/A N/A 2.875±0.00 3.063±0.00 0.464±0.00 N/A 2.076±0.00 1.288±0.00 0.502±0.00 1.924±0.00 N/A N/A
ENST00000506622 N/A N/A 1.462±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.298±0.00
ENST00000511481 3.527±0.00 5.251±0.00 0.610±0.00 0.908±0.11 2.628±0.05 4.187±1.27 N/A 5.226±0.00 N/A 4.033±1.34 N/A 4.481±1.65 4.037±2.21 6.807±3.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001701 IEA in utero embryonic development
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0003674 ND molecular_function
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA:NAS ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 IEA:NAS COPII vesicle coat
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045946 sec24d SEC24 family, member D (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000039234 Sec24d Sec24 related gene family, member D (S. cerevisiae) protein_coding Mus_musculus

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