C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 12, type 2 (N-cadherin 2)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154162 CDH12 9606 - 5:21750673-22853622 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382254 CDH12-001 21751045-22853622 protein_coding
  ENST00000504376 CDH12-002 21750673-22853341 protein_coding
  ENST00000517378 CDH12-004 21751737-22212769 retained_intron
  ENST00000518209 CDH12-006 22078484-22212488 processed_transcript
  ENST00000520668 CDH12-007 22278011-22638994 processed_transcript
  ENST00000521384 CDH12-005 21751695-21889847 processed_transcript
  ENST00000521745 CDH12-008 22078701-22212729 processed_transcript
  ENST00000522262 CDH12-003 21751497-22213750 protein_coding
  ENST00000619694 CDH12-201 21750864-22505376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382254ENST00000504376ENST00000517378ENST00000518209ENST00000520668ENST00000521384ENST00000521745ENST00000522262ENST00000619694
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382254 N/A 0.021±0.00 N/A 1.464±1.26 N/A N/A N/A 0.037±0.00 0.055±0.00 0.034±0.00 N/A N/A N/A N/A
ENST00000504376 N/A N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A
ENST00000517378 N/A N/A 0.232±0.00 0.504±0.00 0.031±0.00 0.012±0.00 N/A N/A N/A 0.044±0.00 N/A 0.065±0.00 N/A 0.337±0.00
ENST00000518209 N/A N/A N/A N/A N/A N/A N/A 0.939±0.00 N/A N/A N/A N/A N/A N/A
ENST00000520668 N/A 0.081±0.00 N/A N/A 0.081±0.00 N/A N/A 0.164±0.00 N/A N/A N/A 0.377±0.00 N/A N/A
ENST00000521384 N/A N/A N/A N/A 0.033±0.00 N/A N/A 0.033±0.00 0.069±0.00 N/A N/A N/A 0.019±0.00 N/A
ENST00000521745 N/A N/A N/A N/A 0.142±0.00 N/A N/A 0.315±0.00 N/A N/A N/A N/A N/A N/A
ENST00000522262 0.033±0.00 N/A N/A 0.236±0.00 0.059±0.00 N/A 0.012±0.00 N/A 0.040±0.00 N/A 0.004±0.00 N/A 0.047±0.00 0.336±0.00
ENST00000619694 N/A N/A N/A 0.262±0.00 N/A N/A N/A 0.036±0.00 0.010±0.00 N/A N/A 0.158±0.00 N/A 0.114±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074386 CDH12 (1 of 2) cadherin 12, type 2 (N-cadherin 2) protein_coding Danio_rerio
ENSDARG00000078226 CDH12 (2 of 2) cadherin 12, type 2 (N-cadherin 2) protein_coding Danio_rerio
ENSMUSG00000040452 Cdh12 cadherin 12 protein_coding Mus_musculus

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