C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: schlafen family member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154760 SLFN13 9606 - 17:35435096-35448837 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285013 SLFN13-002 35435096-35448837 protein_coding
  ENST00000524511 SLFN13-009 35445362-35448369 protein_coding
  ENST00000526483 SLFN13-008 35446986-35448755 retained_intron
  ENST00000526861 SLFN13-004 35437543-35448782 protein_coding
  ENST00000530782 SLFN13-001 35438984-35448837 nonsense_mediated_decay
  ENST00000531588 SLFN13-006 35445448-35448785 protein_coding
  ENST00000532210 SLFN13-007 35442100-35448764 protein_coding
  ENST00000532774 SLFN13-010 35441890-35443954 retained_intron
  ENST00000533791 SLFN13-005 35439498-35446010 protein_coding
  ENST00000534689 SLFN13-003 35439480-35448764 protein_coding
  ENST00000542635 SLFN13-201 35437545-35447394 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285013ENST00000524511ENST00000526483ENST00000530782ENST00000531588ENST00000532774ENST00000533791ENST00000534689ENST00000542635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285013 0.160±0.00 N/A N/A 0.046±0.00 0.398±0.00 0.131±0.00 0.059±0.00 0.079±0.00 0.199±0.00 0.255±0.00 N/A 0.279±0.05 0.036±0.00 0.106±0.00
ENST00000524511 N/A N/A N/A N/A N/A 1.601±0.00 N/A 1.665±0.00 N/A N/A N/A N/A N/A N/A
ENST00000526483 N/A N/A N/A 0.350±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530782 0.419±0.00 1.249±0.00 N/A N/A 0.481±0.00 0.919±0.00 0.160±0.00 0.620±0.00 0.118±0.00 2.573±0.00 N/A 1.063±0.25 0.113±0.02 0.226±0.15
ENST00000531588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.297±0.00
ENST00000532774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A 0.583±0.13 N/A
ENST00000533791 0.289±0.00 0.739±0.00 0.704±0.00 0.034±0.00 1.004±0.77 0.647±0.08 0.155±0.07 0.259±0.00 0.318±0.23 1.605±0.12 N/A 1.235±0.73 0.115±0.01 0.119±0.05
ENST00000534689 N/A N/A N/A 0.042±0.03 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A
ENST00000542635 N/A N/A 0.178±0.00 N/A N/A 0.523±0.00 N/A 0.120±0.00 N/A 0.539±0.00 N/A N/A 0.031±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RF CIL_0003RF_0001 CGP 17:35435096-35537861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005622 IDA intracellular

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000035208 Slfn8 schlafen 8 protein_coding Mus_musculus
ENSMUSG00000069793 Slfn9 schlafen 9 protein_coding Mus_musculus

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