C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155097 ATP6V1C1 9606 + 8:103021063-103073051 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395862 ATP6V1C1-001 103021063-103073051 protein_coding
  ENST00000518738 ATP6V1C1-004 103021102-103069565 protein_coding
  ENST00000518857 ATP6V1C1-002 103021063-103069179 protein_coding
  ENST00000518959 ATP6V1C1-006 103064560-103068825 retained_intron
  ENST00000521514 ATP6V1C1-003 103021088-103069076 protein_coding
  ENST00000521671 ATP6V1C1-005 103051117-103063270 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395862ENST00000518738ENST00000518959ENST00000521514
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395862 N/A 19.494±3.27 2.833±0.00 3.518±0.00 N/A 8.164±0.00 N/A 0.661±0.00 N/A 2.746±1.68 1.015±0.00 3.082±0.44
ENST00000518738 2.095±0.00 N/A N/A 1.919±0.82 2.827±1.89 6.343±0.00 5.298±0.00 2.455±0.29 1.842±1.39 4.824±1.37 4.749±0.27 4.611±0.03
ENST00000518959 N/A N/A N/A N/A N/A N/A N/A N/A 1.068±0.00 N/A N/A N/A
ENST00000521514 N/A N/A N/A 3.061±0.00 3.031±0.00 7.577±0.00 N/A 2.249±0.00 N/A N/A N/A 3.252±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004T5 CIL_0004T5_0003 CGP 8:102826357-103073051
CIL_0006A8 CIL_0006A8_0001 CGP 8:103021063-103230305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 NAS transporter activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005829 TAS cytosol
GO:0005886 ISS plasma membrane
GO:0006879 TAS cellular iron ion homeostasis
GO:0008286 TAS insulin receptor signaling pathway
GO:0008553 IEA hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0015992 TAS proton transport
GO:0016469 TAS proton-transporting two-sector ATPase complex
GO:0031410 IEA cytoplasmic vesicle
GO:0033180 IEA proton-transporting V-type ATPase, V1 domain
GO:0033572 TAS transferrin transport
GO:0045177 IEA apical part of cell
GO:0046961 TAS proton-transporting ATPase activity, rotational mechanism
GO:0051701 TAS interaction with host
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023967 atp6v1c1a ATPase, H+ transporting, lysosomal, V1 subunit C, isoform 1a protein_coding Danio_rerio
ENSDARG00000035880 atp6v1c1b ATPase, H+ transporting, lysosomal, V1 subunit C, isoform 1b protein_coding Danio_rerio
ENSMUSG00000022295 Atp6v1c1 ATPase, H+ transporting, lysosomal V1 subunit C1 protein_coding Mus_musculus

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