C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155749 ALS2CR12 9606 - 2:201288271-201357398 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286190 ALS2CR12-001 201288271-201351451 protein_coding
  ENST00000392257 ALS2CR12-002 201288425-201357378 protein_coding
  ENST00000405148 ALS2CR12-201 201288424-201357378 protein_coding
  ENST00000415745 ALS2CR12-008 201288356-201309249 protein_coding
  ENST00000418364 ALS2CR12-009 201350749-201352082 protein_coding
  ENST00000425488 ALS2CR12-005 201309154-201348301 protein_coding
  ENST00000439709 ALS2CR12-004 201288430-201357398 protein_coding
  ENST00000448967 ALS2CR12-006 201309154-201351451 processed_transcript
  ENST00000494171 ALS2CR12-003 201288425-201357344 retained_intron
  ENST00000494223 ALS2CR12-007 201288551-201289722 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286190ENST00000392257ENST00000405148ENST00000415745ENST00000418364ENST00000425488ENST00000439709ENST00000448967ENST00000494171ENST00000494223
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286190 N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A 0.252±0.00 N/A 0.101±0.02 0.080±0.00 1.384±0.00
ENST00000392257 0.136±0.00 N/A N/A N/A N/A 0.328±0.05 N/A N/A 0.426±0.00 N/A N/A N/A 14.398±8.48
ENST00000405148 N/A N/A N/A N/A N/A N/A N/A N/A 0.242±0.00 N/A N/A N/A N/A
ENST00000415745 N/A N/A N/A 0.643±0.00 0.227±0.00 N/A N/A 0.091±0.00 N/A N/A N/A 0.046±0.00 N/A
ENST00000418364 0.577±0.00 1.714±0.00 0.441±0.00 N/A N/A N/A 0.167±0.00 N/A N/A N/A N/A N/A N/A
ENST00000425488 N/A N/A 1.611±0.00 N/A N/A N/A N/A N/A N/A N/A 0.478±0.00 0.077±0.00 N/A
ENST00000439709 0.105±0.00 N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A
ENST00000448967 N/A 0.643±0.00 1.691±0.00 0.673±0.00 2.459±0.00 1.436±0.64 0.194±0.00 0.016±0.00 0.890±0.41 0.505±0.34 0.081±0.00 0.076±0.02 N/A
ENST00000494171 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494223 0.275±0.00 0.812±0.00 N/A 0.693±0.00 0.944±0.00 N/A 0.475±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0001 VISTA 2:201132231-201734391

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001520 IEA outer dense fiber
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0035686 IEA sperm fibrous sheath
GO:0036126 IEA sperm flagellum
GO:0043087 NAS regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000047528 Als2cr12 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human) protein_coding Mus_musculus

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