C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB39B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155961 RAB39B 9606 - X:155258241-155264589 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369454 RAB39B-001 155258241-155264589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369454 0.017±0.00 0.668±0.00 0.092±0.00 5.251±2.58 0.055±0.04 0.175±0.02 0.045±0.03 0.138±0.07 0.112±0.08 0.426±0.02 0.020±0.00 0.180±0.12 0.096±0.01 0.477±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LK CIL_0003LK_0001 CGP X:155197007-155264589

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 ISS vesicle-mediated transport
GO:0031489 IPI myosin V binding
GO:0031982 IDA vesicle
GO:0043005 IDA neuron projection
GO:0050808 ISS synapse organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019312 tmem230 transmembrane protein 230 protein_coding Danio_rerio
ENSDARG00000036501 rab39b RAB39B, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000031202 Rab39b RAB39B, member RAS oncogene family protein_coding Mus_musculus

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