C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155959-ENSG00000155961 CGP 9606 X:155197007-155264589
GeneTranscriptPositionBiotype
ENSG00000155959 (VBP1)
von Hippel-Lindau binding protein 1 		ENST00000286428 (VBP1-001) 155216366-155239817 protein_coding
ENST00000460509 (VBP1-003) 155227144-155238961 retained_intron
ENST00000535916 (VBP1-002) 155197007-155239044 protein_coding
ENSG00000155961 (RAB39B)
RAB39B, member RAS oncogene family 		ENST00000369454 (RAB39B-001) 155258241-155264589 protein_coding
CIL_0003LK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031197-ENSMUSG00000031202 CGP 10090 X:75514299-75578231
GeneTranscriptPositionBiotype
ENSMUSG00000031197 (Vbp1)
von Hippel-Lindau binding protein 1 		ENSMUST00000033540 (Vbp1-001) 75514299-75534942 protein_coding
ENSMUST00000114070 (Vbp1-002) 75514299-75524046 protein_coding
ENSMUST00000123419 (Vbp1-003) 75514317-75521755 retained_intron
ENSMUSG00000031202 (Rab39b)
RAB39B, member RAS oncogene family 		ENSMUST00000033545 (Rab39b-001) 75572046-75578231 protein_coding
ENSMUSG00000086573 (Gm15384)
predicted gene 15384 		ENSMUST00000138832 (Gm15384-001) 75551117-75551824 antisense
ENSMUSG00000086937 (Gm15063)
predicted gene 15063 		ENSMUST00000152648 (Gm15063-001) 75573452-75575268 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LK_0001ENSG00000155959ENST00000286428ENST00000460509ENST00000535916ENSG00000155961ENST00000369454CIL_0003LK_0002ENSMUSG00000031197ENSMUST00000033540ENSMUST00000114070ENSMUST00000123419ENSMUSG00000031202ENSMUST00000033545ENSMUSG00000086573ENSMUST00000138832ENSMUSG00000086937ENSMUST00000152648
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LK_0001ENSG00000155959ENST00000286428ENST00000460509ENSG00000155961ENST00000369454CIL_0003LK_0002ENSMUSG00000031197ENSMUST00000033540ENSMUST00000114070ENSMUST00000123419ENSMUSG00000031202ENSMUST00000033545ENSMUSG00000086573ENSMUST00000138832ENSMUSG00000086937ENSMUST00000152648
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155959 ENST00000286428 6.891±0.00 10.982±0.00 2.099±0.00 21.507±4.22 9.343±2.87 8.832±6.90 12.369±6.09 10.953±5.88 5.283±2.70 9.569±3.95 8.720±3.27 12.607±4.23 9.701±2.85 10.481±2.78
ENST00000460509 2.494±0.00 N/A 3.024±0.00 12.458±0.00 N/A N/A N/A N/A 4.194±0.00 N/A N/A N/A N/A 3.012±0.00
ENST00000535916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155961 ENST00000369454 0.017±0.00 0.668±0.00 0.092±0.00 5.251±2.58 0.055±0.04 0.175±0.02 0.045±0.03 0.138±0.07 0.112±0.08 0.426±0.02 0.020±0.00 0.180±0.12 0.096±0.01 0.477±0.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031197 ENSMUST00000033540 3.056±0.62 1.291±0.73 15.132±2.36 28.457±12.73 2.882±0.47 2.072±0.79 5.412±0.38 4.417±1.31 11.958±11.34 5.502±1.47 14.902±0.87 4.780±5.88 11.464±6.65 1.284±0.35
ENSMUST00000114070 1.021±0.00 0.919±0.41 N/A N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A 1.874±1.54 8.316±3.10 1.741±0.00
ENSMUST00000123419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.907±0.00 N/A N/A
ENSMUSG00000031202 ENSMUST00000033545 0.213±0.18 0.374±0.21 0.187±0.03 4.289±1.31 0.149±0.11 0.326±0.11 0.033±0.01 0.177±0.06 0.021±0.01 0.193±0.02 0.022±0.01 0.767±0.39 0.114±0.10 0.055±0.04
ENSMUSG00000086573 ENSMUST00000138832 0.125±0.04 0.201±0.08 0.151±0.00 0.556±0.00 0.316±0.14 0.618±0.48 N/A 0.146±0.04 0.175±0.10 0.261±0.12 N/A 0.511±0.20 0.140±0.01 0.123±0.03
ENSMUSG00000086937 ENSMUST00000152648 0.504±0.05 N/A 0.173±0.06 2.796±0.27 0.107±0.00 0.274±0.00 N/A 0.238±0.03 0.068±0.04 N/A 0.069±0.02 0.791±0.52 0.159±0.09 0.048±0.01

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