C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylserine synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156471 PTDSS1 9606 + 8:96261715-96336995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337004 PTDSS1-002 96261913-96334552 nonsense_mediated_decay
  ENST00000517309 PTDSS1-001 96261715-96336995 protein_coding
  ENST00000517557 PTDSS1-005 96261967-96287388 retained_intron
  ENST00000517982 PTDSS1-006 96330317-96333892 retained_intron
  ENST00000518776 PTDSS1-004 96283597-96304157 processed_transcript
  ENST00000522072 PTDSS1-003 96295192-96333982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337004ENST00000517309ENST00000518776ENST00000522072
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337004 16.252±0.00 16.722±0.00 1.891±0.00 14.582±1.88 9.615±1.25 8.281±1.72 29.359±15.20 10.316±0.23 9.325±2.47 13.947±0.00 6.154±3.96 20.116±9.62 29.462±11.48 12.760±0.82
ENST00000517309 N/A N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518776 N/A N/A 7.831±0.00 22.821±0.00 11.864±0.00 7.542±0.00 15.751±0.00 19.058±0.00 7.519±0.00 N/A 1.771±0.00 20.742±0.00 N/A N/A
ENST00000522072 12.382±0.00 N/A 1.679±0.00 13.787±0.00 5.790±0.00 3.627±0.00 N/A N/A N/A N/A 4.373±0.00 17.089±8.61 34.949±0.00 9.638±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SY CIL_0006SY_0001 CGP 8:96239398-96336995

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0016740 IEA transferase activity
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012588 ptdss1a phosphatidylserine synthase 1a protein_coding Danio_rerio
ENSDARG00000036114 ptdss1b phosphatidylserine synthase 1b protein_coding Danio_rerio
ENSMUSG00000021518 Ptdss1 phosphatidylserine synthase 1 protein_coding Mus_musculus

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