C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159720 ATP6V0D1 9606 - 16:67438014-67481237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290949 ATP6V0D1-001 67438019-67481237 protein_coding
  ENST00000426604 ATP6V0D1-004 67438413-67459225 nonsense_mediated_decay
  ENST00000540149 ATP6V0D1-002 67438476-67481117 protein_coding
  ENST00000561658 ATP6V0D1-013 67452244-67481157 processed_transcript
  ENST00000561852 ATP6V0D1-014 67438809-67481148 nonsense_mediated_decay
  ENST00000563064 ATP6V0D1-007 67438822-67481181 nonsense_mediated_decay
  ENST00000563305 ATP6V0D1-006 67438037-67439818 retained_intron
  ENST00000564191 ATP6V0D1-008 67439088-67481086 nonsense_mediated_decay
  ENST00000564615 ATP6V0D1-017 67438825-67453715 protein_coding
  ENST00000564788 ATP6V0D1-016 67439108-67481168 nonsense_mediated_decay
  ENST00000565835 ATP6V0D1-015 67438321-67481079 protein_coding
  ENST00000566322 ATP6V0D1-009 67439053-67459180 nonsense_mediated_decay
  ENST00000567170 ATP6V0D1-011 67438845-67443407 retained_intron
  ENST00000567694 ATP6V0D1-012 67438541-67441392 processed_transcript
  ENST00000568101 ATP6V0D1-010 67443100-67459219 nonsense_mediated_decay
  ENST00000568298 ATP6V0D1-003 67454579-67481157 retained_intron
  ENST00000568620 ATP6V0D1-005 67438014-67441732 retained_intron
  ENST00000602876 ATP6V0D1-201 67438019-67481110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290949ENST00000561658ENST00000561852ENST00000564191ENST00000565835ENST00000567694ENST00000568298ENST00000602876
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290949 21.936±0.00 32.200±0.00 2.171±0.00 38.491±18.19 17.564±13.98 8.390±4.37 10.326±7.53 34.203±29.24 21.407±0.00 31.006±0.00 39.232±0.00 31.949±14.72 65.617±3.91 44.586±16.72
ENST00000561658 N/A N/A N/A N/A N/A 10.036±0.00 N/A N/A 3.900±0.00 N/A 16.268±0.00 N/A N/A N/A
ENST00000561852 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.694±0.00 N/A N/A N/A 26.742±0.00
ENST00000564191 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.822±0.00 N/A N/A N/A N/A
ENST00000565835 18.540±0.00 34.235±0.00 2.083±0.00 50.214±0.00 23.601±0.00 17.064±0.00 10.221±0.00 38.250±0.00 23.045±0.00 17.868±0.00 19.427±0.00 18.308±2.80 20.353±2.07 25.686±0.47
ENST00000567694 N/A N/A 3.482±0.00 N/A N/A 6.771±0.00 N/A N/A N/A 3.747±0.00 N/A 36.581±0.00 79.558±0.00 72.298±0.00
ENST00000568298 N/A N/A 0.534±0.00 N/A 0.638±0.00 0.705±0.00 N/A N/A 0.425±0.00 0.415±0.00 N/A N/A N/A N/A
ENST00000602876 8.322±0.00 N/A N/A 5.617±0.00 N/A 9.506±0.00 4.053±0.00 1.034±0.00 1.842±0.00 8.707±6.26 6.374±0.00 3.013±0.00 18.676±2.55 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JT CIL_0005JT_0001 CGP 16:67430652-67481237
CIL_0005JU CIL_0005JU_0001 CGP 16:67438014-67483813

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005769 IEA early endosome
GO:0005813 IDA centrosome
GO:0006879 TAS cellular iron ion homeostasis
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0007420 IEA brain development
GO:0008021 IEA synaptic vesicle
GO:0008286 TAS insulin receptor signaling pathway
GO:0008553 IEA hydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0010008 TAS endosome membrane
GO:0015078 IEA hydrogen ion transmembrane transporter activity
GO:0015991 IEA ATP hydrolysis coupled proton transport
GO:0015992 NAS proton transport
GO:0016020 IDA membrane
GO:0016324 IEA apical plasma membrane
GO:0016471 NAS vacuolar proton-transporting V-type ATPase complex
GO:0030670 TAS phagocytic vesicle membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0032403 IEA protein complex binding
GO:0033179 IEA proton-transporting V-type ATPase, V0 domain
GO:0033572 TAS transferrin transport
GO:0042384 ISS cilium assembly
GO:0043005 IEA neuron projection
GO:0043234 IEA protein complex
GO:0043679 IEA axon terminus
GO:0044267 TAS cellular protein metabolic process
GO:0051701 TAS interaction with host
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069090 atp6v0d1 ATPase, H+ transporting, V0 subunit D isoform 1 protein_coding Danio_rerio
ENSMUSG00000013160 Atp6v0d1 ATPase, H+ transporting, lysosomal V0 subunit D1 protein_coding Mus_musculus

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