C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: radial spoke head 1 homolog (Chlamydomonas)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160188 RSPH1 9606 - 21:42472486-42496354 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291536 RSPH1-001 42472486-42496354 protein_coding
  ENST00000398352 RSPH1-003 42472697-42496186 protein_coding
  ENST00000493019 RSPH1-002 42472486-42496246 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungOvaryTestisENST00000291536ENST00000398352ENST00000493019
Transcript ID Brain Colon Heart Lung Ovary Testis
ENST00000291536 8.308±0.00 0.822±0.00 N/A 23.813±0.00 11.376±11.45 15.668±4.45
ENST00000398352 0.957±0.00 N/A N/A 5.690±3.43 8.941±0.00 12.444±3.51
ENST00000493019 N/A N/A 0.047±0.00 0.584±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0001 VISTA 21:42290762-42894212
CIL_00036D CIL_00036D_0001 CGP 21:42403899-42496354
CIL_0000FB CIL_0000FB_0001 CGP 21:42472486-42581440

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0031514 IDA motile cilium
GO:0035082 IMP axoneme assembly
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070446 RSPH1 radial spoke head 1 homolog (Chlamydomonas) protein_coding Danio_rerio
ENSMUSG00000024033 Rsph1 radial spoke head 1 homolog (Chlamydomonas) protein_coding Mus_musculus

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