C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 11 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160695 VPS11 9606 + 11:119067692-119081978 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000524454 VPS11-009 119079182-119081965 processed_transcript
  ENST00000526829 VPS11-007 119072032-119076928 retained_intron
  ENST00000529545 VPS11-006 119069553-119070784 retained_intron
  ENST00000530809 VPS11-005 119073822-119077647 protein_coding
  ENST00000534551 VPS11-008 119077020-119078329 processed_transcript
  ENST00000614944 VPS11-002 119067821-119081967 protein_coding
  ENST00000620429 VPS11-201 119069533-119081964 protein_coding
  ENST00000621676 VPS11-001 119067692-119081978 protein_coding
  ENST00000622309 VPS11-004 119067823-119081964 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000524454ENST00000526829ENST00000534551ENST00000614944ENST00000620429ENST00000621676ENST00000622309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000524454 N/A 17.347±0.00 N/A 20.489±0.00 N/A N/A N/A N/A 2.976±0.00 N/A N/A N/A N/A N/A
ENST00000526829 N/A N/A N/A N/A N/A N/A N/A 1.183±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534551 N/A N/A 6.660±0.00 8.048±0.00 3.601±0.00 2.807±0.00 1.895±0.00 N/A N/A 7.259±0.00 N/A 3.421±0.00 N/A N/A
ENST00000614944 N/A 4.018±0.00 2.248±0.00 N/A 0.589±0.00 N/A 0.474±0.00 1.636±0.00 N/A 1.143±0.00 N/A N/A N/A 2.556±0.00
ENST00000620429 5.947±0.00 11.696±0.00 N/A 9.717±0.00 6.739±0.00 6.449±0.00 3.044±0.00 8.744±0.00 2.108±0.00 4.551±0.00 9.008±0.00 6.167±3.95 8.493±1.37 8.075±0.89
ENST00000621676 4.592±0.00 N/A 0.573±0.00 6.735±0.15 3.472±2.57 3.009±0.68 2.429±1.44 5.679±0.00 2.267±1.36 3.842±0.46 6.454±3.13 5.191±2.79 7.835±2.94 4.982±2.77
ENST00000622309 N/A N/A N/A N/A 0.605±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IDA endosome
GO:0005769 IEA early endosome
GO:0005884 IEA actin filament
GO:0006886 IEA intracellular protein transport
GO:0008270 IEA zinc ion binding
GO:0016192 IEA vesicle-mediated transport
GO:0030139 IDA endocytic vesicle
GO:0030897 IDA HOPS complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036338 vps11 vacuolar protein sorting 11 protein_coding Danio_rerio
ENSMUSG00000032127 Vps11 vacuolar protein sorting 11 (yeast) protein_coding Mus_musculus

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