C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXVI, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160963 COL26A1 9606 + 7:101362820-101559024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313669 COL26A1-002 101362820-101559024 protein_coding
  ENST00000613091 COL26A1-003 101553203-101557633 retained_intron
  ENST00000613501 COL26A1-001 101362877-101559024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313669ENST00000613091ENST00000613501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313669 N/A N/A N/A 1.587±0.59 N/A 0.003±0.00 1.201±0.37 N/A N/A N/A N/A 0.610±0.27 N/A
ENST00000613091 N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A 0.345±0.00 0.134±0.00 0.148±0.00 N/A 0.747±0.00
ENST00000613501 0.018±0.00 0.129±0.00 0.126±0.00 1.985±0.00 N/A 0.014±0.00 N/A 0.185±0.00 0.135±0.00 N/A 0.598±0.43 0.366±0.18 0.601±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005783 IEA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005794 IEA Golgi apparatus
GO:0005886 TAS plasma membrane
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079330 COL26A1 collagen, type XXVI, alpha 1 protein_coding Danio_rerio
ENSMUSG00000004415 Col26a1 collagen, type XXVI, alpha 1 protein_coding Mus_musculus

Loading