C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXVI, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004415 Col26a1 10090 - 5:136741759-136883209 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057497 Col26a1-001 136741759-136883121 protein_coding
  ENSMUST00000111103 Col26a1-004 136741759-136883184 protein_coding
  ENSMUST00000125061 Col26a1-005 136743074-136747701 retained_intron
  ENSMUST00000126311 Col26a1-008 136757663-136773046 processed_transcript
  ENSMUST00000140245 Col26a1-009 136836588-136882930 retained_intron
  ENSMUST00000141744 Col26a1-007 136742755-136744549 retained_intron
  ENSMUST00000147083 Col26a1-006 136754246-136755392 retained_intron
  ENSMUST00000153127 Col26a1-003 136757489-136883209 retained_intron
  ENSMUST00000156962 Col26a1-002 136753527-136882910 retained_intron
  ENSMUST00000173496 Col26a1-011 136765341-136882743 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057497ENSMUST00000111103ENSMUST00000125061ENSMUST00000126311ENSMUST00000140245ENSMUST00000141744ENSMUST00000147083ENSMUST00000153127ENSMUST00000173496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057497 0.045±0.02 0.071±0.02 N/A N/A 0.287±0.01 0.093±0.05 0.043±0.00 N/A 0.016±0.00 0.137±0.01 0.312±0.12 1.091±0.00 N/A 3.726±1.65
ENSMUST00000111103 4.172±0.42 N/A 0.091±0.00 9.224±6.15 0.372±0.14 0.088±0.06 0.159±0.00 2.305±0.09 0.532±0.60 0.211±0.04 0.290±0.00 4.310±1.78 0.930±0.90 2.396±1.13
ENSMUST00000125061 N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A
ENSMUST00000126311 N/A N/A N/A N/A N/A 1.458±0.00 1.105±0.00 N/A N/A N/A N/A N/A N/A 54.203±20.65
ENSMUST00000140245 N/A N/A N/A N/A N/A 1.082±0.00 0.526±0.00 N/A N/A N/A N/A N/A 0.847±0.00 N/A
ENSMUST00000141744 N/A N/A N/A N/A N/A N/A 0.384±0.12 N/A N/A 0.218±0.00 N/A N/A N/A N/A
ENSMUST00000147083 0.285±0.21 1.399±0.36 0.289±0.00 N/A 1.566±0.68 1.201±0.53 0.379±0.00 N/A 0.353±0.24 1.233±0.42 0.235±0.07 N/A N/A N/A
ENSMUST00000153127 2.893±0.57 0.195±0.00 N/A N/A 0.398±0.00 0.396±0.00 0.306±0.00 1.899±0.36 0.053±0.00 0.320±0.00 N/A 5.208±1.31 0.692±0.00 N/A
ENSMUST00000173496 N/A 0.701±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O9 CIL_0005O9_0002 CGP 5:136693146-136883209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079330 COL26A1 collagen, type XXVI, alpha 1 protein_coding Danio_rerio
ENSG00000160963 COL26A1 collagen, type XXVI, alpha 1 protein_coding Homo_sapiens

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