C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: podoplanin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162493 PDPN 9606 + 1:13583465-13617957 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294489 PDPN-001 13583465-13617957 protein_coding
  ENST00000376057 PDPN-002 13583762-13617957 protein_coding
  ENST00000376061 PDPN-006 13584267-13616782 protein_coding
  ENST00000475043 PDPN-005 13585472-13616247 protein_coding
  ENST00000487038 PDPN-004 13585461-13615917 protein_coding
  ENST00000488631 PDPN-003 13585480-13616259 nonsense_mediated_decay
  ENST00000506205 PDPN-008 13583832-13607221 nonsense_mediated_decay
  ENST00000509009 PDPN-009 13584093-13615964 protein_coding
  ENST00000510906 PDPN-010 13583833-13614514 protein_coding
  ENST00000513143 PDPN-007 13584270-13616564 protein_coding
  ENST00000617617 PDPN-201 13583757-13617953 protein_coding
  ENST00000621990 PDPN-011 13583831-13617957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294489ENST00000376057ENST00000376061ENST00000475043ENST00000488631ENST00000506205ENST00000509009ENST00000510906ENST00000617617ENST00000621990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294489 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.432±0.00 N/A N/A N/A N/A
ENST00000376057 N/A 2.448±0.00 N/A 0.917±0.42 0.859±0.00 7.238±0.00 N/A N/A 0.710±0.00 3.327±0.00 4.103±0.00 6.439±1.96 9.327±3.56 2.997±0.00
ENST00000376061 N/A N/A 0.652±0.00 N/A 0.773±0.00 N/A 1.074±0.00 N/A 1.030±0.99 N/A 1.290±0.00 1.088±0.00 N/A N/A
ENST00000475043 5.532±0.00 3.054±0.00 N/A 2.298±0.00 N/A N/A 3.746±0.00 N/A N/A N/A 4.655±0.00 5.586±0.00 23.194±2.93 1.160±0.00
ENST00000488631 N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.490±0.00 N/A N/A N/A
ENST00000509009 N/A N/A N/A N/A N/A N/A N/A 3.148±0.00 0.161±0.00 11.572±0.00 12.448±0.00 N/A N/A N/A
ENST00000510906 N/A N/A N/A N/A 2.859±0.00 N/A 2.389±0.00 N/A N/A 1.328±0.00 2.340±0.00 4.222±0.00 N/A N/A
ENST00000617617 N/A N/A N/A N/A N/A N/A 1.901±0.00 N/A N/A 2.693±0.00 2.256±0.00 2.645±0.00 N/A N/A
ENST00000621990 8.385±0.00 1.426±0.00 N/A N/A 1.633±0.09 2.679±1.58 N/A 1.174±0.00 0.831±0.00 1.907±1.09 0.374±0.00 8.497±0.27 22.280±1.99 1.927±1.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001726 ISS ruffle
GO:0001946 ISS lymphangiogenesis
GO:0005886 ISS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006693 IEA prostaglandin metabolic process
GO:0006928 IEA cellular component movement
GO:0006954 IEA inflammatory response
GO:0007155 IEA cell adhesion
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0008283 IEA cell proliferation
GO:0008360 IEA regulation of cell shape
GO:0009897 IEA external side of plasma membrane
GO:0010572 IEA positive regulation of platelet activation
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030027 ISS lamellipodium
GO:0030175 ISS filopodium
GO:0030324 ISS lung development
GO:0030335 IEA positive regulation of cell migration
GO:0035239 IEA tube morphogenesis
GO:0048286 IEA lung alveolus development
GO:0051272 ISS positive regulation of cellular component movement
GO:0055093 IEA response to hyperoxia
GO:2000045 IEA regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000028583 Pdpn podoplanin protein_coding Mus_musculus

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