C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 1 open reading frame 86
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162585 C1orf86 9606 - 1:2184461-2212720 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000378543 C1orf86-006 2189548-2194750 protein_coding
  ENST00000378546 C1orf86-008 2189548-2194774 protein_coding
  ENST00000400918 C1orf86-009 2185175-2194751 protein_coding
  ENST00000400919 C1orf86-201 2184461-2194775 protein_coding
  ENST00000401813 C1orf86-012 2189548-2199907 processed_transcript
  ENST00000414253 C1orf86-001 2184478-2194775 nonsense_mediated_decay
  ENST00000420515 C1orf86-010 2191901-2194748 protein_coding
  ENST00000420964 C1orf86-014 2212171-2212574 retained_intron
  ENST00000428120 C1orf86-002 2184478-2194741 nonsense_mediated_decay
  ENST00000440825 C1orf86-011 2189580-2194739 nonsense_mediated_decay
  ENST00000469733 C1orf86-003 2184464-2207733 processed_transcript
  ENST00000476803 C1orf86-007 2189569-2194213 processed_transcript
  ENST00000487186 C1orf86-004 2189548-2212720 processed_transcript
  ENST00000497675 C1orf86-005 2189544-2194108 retained_intron
  ENST00000514625 C1orf86-013 2198063-2203882 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378543ENST00000378546ENST00000400919ENST00000420515ENST00000428120ENST00000469733ENST00000476803ENST00000497675
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378543 15.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378546 18.739±0.00 80.961±0.00 N/A 31.791±0.00 39.581±0.00 13.670±0.00 47.144±0.00 13.292±0.00 N/A 7.892±0.00 39.871±0.00 N/A N/A
ENST00000400919 N/A N/A 48.641±0.00 N/A 12.902±0.00 5.174±0.00 18.890±0.00 2.309±1.64 31.360±0.00 N/A 10.973±0.00 38.427±9.75 38.046±0.00
ENST00000420515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.591±0.00 N/A N/A
ENST00000428120 N/A N/A N/A N/A 4.825±0.00 N/A N/A N/A N/A 1.197±0.00 4.984±0.00 N/A N/A
ENST00000469733 N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A N/A
ENST00000476803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.372±0.00 N/A N/A
ENST00000497675 N/A 7.290±0.00 N/A 1.543±1.10 N/A 0.130±0.00 N/A 0.824±0.67 N/A 1.216±0.00 2.886±0.34 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0001 VISTA 1:1910870-2513425

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IDA chromosome
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0019985 IMP translesion synthesis
GO:0030054 IDA cell junction
GO:0031593 IDA polyubiquitin binding
GO:0036297 IMP interstrand cross-link repair
GO:0043130 IDA ubiquitin binding
GO:0043240 IDA Fanconi anaemia nuclear complex
GO:0046872 IEA metal ion binding
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

No Homologs available.

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