C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leiomodin 1 (smooth muscle)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163431 LMOD1 9606 - 1:201896452-201946588 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367288 LMOD1-001 201896452-201946587 protein_coding
  ENST00000616739 LMOD1-201 201896456-201946588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367288ENST00000616739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367288 94.406±0.00 17.472±0.00 0.497±0.00 4.935±4.87 15.027±7.99 34.978±27.05 1.507±1.02 4.488±4.31 24.554±23.81 20.530±19.34 14.733±13.90 24.753±23.66 28.984±6.98 14.202±7.33
ENST00000616739 N/A N/A 0.216±0.00 0.222±0.00 N/A N/A 0.377±0.00 N/A 0.332±0.00 N/A 2.483±0.00 5.392±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LU CIL_0001LU_0002 CGP 1:201888680-201946588
CIL_0001LV CIL_0001LV_0002 CGP 1:201896452-201970661

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IEA tropomyosin binding
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0006936 TAS muscle contraction
GO:0016020 TAS membrane
GO:0051694 IEA pointed-end actin filament capping

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056111 lmod1 leiomodin 1 (smooth muscle) protein_coding Danio_rerio
ENSDARG00000077261 CR628365.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000048096 Lmod1 leiomodin 1 (smooth muscle) protein_coding Mus_musculus

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