C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: procollagen C-endopeptidase enhancer 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163710 PCOLCE2 9606 - 3:142815922-142889203 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295992 PCOLCE2-001 142817869-142889203 protein_coding
  ENST00000461818 PCOLCE2-002 142863889-142889022 processed_transcript
  ENST00000470310 PCOLCE2-010 142815922-142829731 nonsense_mediated_decay
  ENST00000470795 PCOLCE2-009 142817915-142829855 retained_intron
  ENST00000480473 PCOLCE2-006 142820967-142848344 nonsense_mediated_decay
  ENST00000483454 PCOLCE2-003 142887226-142888927 retained_intron
  ENST00000483986 PCOLCE2-007 142829677-142848322 retained_intron
  ENST00000485766 PCOLCE2-004 142818259-142888899 protein_coding
  ENST00000493733 PCOLCE2-005 142864110-142888745 processed_transcript
  ENST00000495732 PCOLCE2-008 142846652-142889061 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295992ENST00000470310ENST00000470795ENST00000480473ENST00000483986ENST00000485766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295992 11.430±0.00 2.040±0.00 0.730±0.00 0.203±0.00 47.203±45.75 5.979±3.60 10.986±7.23 6.356±3.31 8.353±6.55 4.172±2.43 0.913±0.28 1.751±1.21 16.979±2.27 2.315±1.18
ENST00000470310 N/A N/A 0.578±0.00 0.317±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470795 10.959±0.00 1.608±0.00 0.434±0.00 0.201±0.10 48.778±0.00 10.524±0.00 8.231±0.00 3.790±0.00 3.010±0.00 4.703±3.92 N/A 1.774±1.69 13.899±2.07 2.566±1.09
ENST00000480473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 2.605±0.00
ENST00000483986 N/A N/A 1.123±0.00 0.477±0.00 3.905±0.00 N/A N/A 5.062±0.00 N/A N/A 1.977±0.00 0.192±0.03 N/A N/A
ENST00000485766 N/A N/A N/A 0.119±0.00 1.435±0.00 1.161±0.00 1.894±0.00 2.416±0.00 8.644±0.00 0.698±0.00 0.489±0.00 N/A N/A 0.906±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065B CIL_00065B_0002 CGP 3:142724074-142889203

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005576 IEA extracellular region
GO:0008191 IEA metalloendopeptidase inhibitor activity
GO:0008201 IDA heparin binding
GO:0010952 IDA positive regulation of peptidase activity
GO:0016504 IDA peptidase activator activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008450 pcolce2a procollagen C-endopeptidase enhancer 2a protein_coding Danio_rerio
ENSDARG00000055575 pcolce2b procollagen C-endopeptidase enhancer 2b protein_coding Danio_rerio
ENSMUSG00000015354 Pcolce2 procollagen C-endopeptidase enhancer 2 protein_coding Mus_musculus

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