C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00065B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061203-ENSDARG00000055575 CGP 7955 24:5924127-5973257
GeneTranscriptPositionBiotype
ENSDARG00000055575 (pcolce2b)
procollagen C-endopeptidase enhancer 2b 		ENSDART00000077951 (pcolce2b-001) 5954968-5973257 protein_coding
ENSDARG00000061203 (trpc1)
transient receptor potential cation channel, subfamily C, member 1 		ENSDART00000087034 (trpc1-201) 5924401-5952774 protein_coding
ENSDART00000139191 (trpc1-001) 5924127-5953001 protein_coding
CIL_00065B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144935-ENSG00000163710 CGP 9606 3:142724074-142889203
GeneTranscriptPositionBiotype
ENSG00000144935 (TRPC1)
transient receptor potential cation channel, subfamily C, member 1 		ENST00000273482 (TRPC1-001) 142724169-142807888 protein_coding
ENST00000460401 (TRPC1-004) 142724565-142777658 nonsense_mediated_decay
ENST00000476941 (TRPC1-002) 142724074-142806428 protein_coding
ENST00000480101 (TRPC1-005) 142780940-142785287 retained_intron
ENST00000612385 (TRPC1-201) 142724435-142807520 protein_coding
ENSG00000163710 (PCOLCE2)
procollagen C-endopeptidase enhancer 2 		ENST00000295992 (PCOLCE2-001) 142817869-142889203 protein_coding
ENST00000461818 (PCOLCE2-002) 142863889-142889022 processed_transcript
ENST00000470310 (PCOLCE2-010) 142815922-142829731 nonsense_mediated_decay
ENST00000470795 (PCOLCE2-009) 142817915-142829855 retained_intron
ENST00000480473 (PCOLCE2-006) 142820967-142848344 nonsense_mediated_decay
ENST00000483454 (PCOLCE2-003) 142887226-142888927 retained_intron
ENST00000483986 (PCOLCE2-007) 142829677-142848322 retained_intron
ENST00000485766 (PCOLCE2-004) 142818259-142888899 protein_coding
ENST00000493733 (PCOLCE2-005) 142864110-142888745 processed_transcript
ENST00000495732 (PCOLCE2-008) 142846652-142889061 processed_transcript
ENSG00000240950 (RP11-372E1.1)
 ENST00000489462 (RP11-372E1.1-001) 142827096-142827728 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065B_0001ENSDARG00000055575ENSDART00000077951ENSDARG00000061203ENSDART00000087034ENSDART00000139191CIL_00065B_0002ENSG00000144935ENST00000273482ENST00000460401ENST00000476941ENST00000480101ENST00000612385ENSG00000163710ENST00000295992ENST00000461818ENST00000470310ENST00000470795ENST00000480473ENST00000483454ENST00000483986ENST00000485766ENST00000493733ENST00000495732ENSG00000240950ENST00000489462
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065B_0001ENSDARG00000055575ENSDART00000077951ENSDARG00000061203ENSDART00000087034ENSDART00000139191CIL_00065B_0002ENSG00000144935ENST00000273482ENST00000476941ENST00000480101ENST00000612385ENSG00000163710ENST00000295992ENST00000470310ENST00000470795ENST00000480473ENST00000483986ENST00000485766ENSG00000240950ENST00000489462
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055575 ENSDART00000077951 N/A N/A N/A 10.119±1.06 N/A N/A 2.541±2.55 1.693±0.90 0.812±0.00 N/A 9.452±0.00 N/A N/A N/A
ENSDARG00000061203 ENSDART00000087034 N/A N/A N/A N/A N/A N/A 0.121±0.07 N/A 0.036±0.00 N/A 0.313±0.00 N/A N/A N/A
ENSDART00000139191 N/A N/A N/A 10.563±0.29 N/A N/A N/A 0.062±0.00 N/A N/A 0.571±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144935 ENST00000273482 0.809±0.00 1.130±0.00 N/A 2.211±0.48 0.560±0.00 0.862±0.35 1.545±0.00 1.271±0.00 0.577±0.52 0.461±0.31 0.200±0.00 2.377±0.33 0.291±0.06 1.460±0.05
ENST00000460401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476941 N/A N/A N/A 2.092±1.08 0.448±0.04 0.451±0.00 0.722±0.29 N/A 1.157±1.13 0.414±0.05 0.314±0.16 1.339±0.83 0.535±0.00 2.221±0.00
ENST00000480101 N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 4.370±0.00 N/A N/A N/A N/A N/A
ENST00000612385 0.639±0.00 N/A N/A N/A 1.625±0.00 N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A 0.507±0.00
ENSG00000163710 ENST00000295992 11.430±0.00 2.040±0.00 0.730±0.00 0.203±0.00 47.203±45.75 5.979±3.60 10.986±7.23 6.356±3.31 8.353±6.55 4.172±2.43 0.913±0.28 1.751±1.21 16.979±2.27 2.315±1.18
ENST00000461818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470310 N/A N/A 0.578±0.00 0.317±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470795 10.959±0.00 1.608±0.00 0.434±0.00 0.201±0.10 48.778±0.00 10.524±0.00 8.231±0.00 3.790±0.00 3.010±0.00 4.703±3.92 N/A 1.774±1.69 13.899±2.07 2.566±1.09
ENST00000480473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 2.605±0.00
ENST00000483454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483986 N/A N/A 1.123±0.00 0.477±0.00 3.905±0.00 N/A N/A 5.062±0.00 N/A N/A 1.977±0.00 0.192±0.03 N/A N/A
ENST00000485766 N/A N/A N/A 0.119±0.00 1.435±0.00 1.161±0.00 1.894±0.00 2.416±0.00 8.644±0.00 0.698±0.00 0.489±0.00 N/A N/A 0.906±0.00
ENST00000493733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240950 ENST00000489462 1.371±0.00 0.264±0.00 0.301±0.00 0.177±0.00 0.831±0.00 0.413±0.00 N/A 0.240±0.00 0.035±0.00 0.371±0.02 0.558±0.00 0.171±0.09 0.118±0.00 0.163±0.08

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