C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smad nuclear interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163877 SNIP1 9606 - 1:37534449-37554302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296215 SNIP1-001 37534449-37554302 protein_coding
  ENST00000468040 SNIP1-003 37540500-37554248 processed_transcript
  ENST00000493916 SNIP1-002 37552487-37554290 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296215ENST00000468040ENST00000493916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296215 2.384±0.00 4.290±0.00 0.140±0.00 1.701±0.61 1.383±1.04 1.837±0.00 1.090±0.63 1.730±1.17 1.465±0.05 0.744±0.51 1.276±0.36 2.383±1.31 2.887±0.53 6.459±0.29
ENST00000468040 N/A N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A N/A 1.674±0.00 N/A 4.307±0.00
ENST00000493916 N/A N/A N/A N/A N/A N/A N/A 0.908±0.00 N/A N/A 1.163±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007249 IEA I-kappaB kinase/NF-kappaB signaling
GO:0035196 IMP production of miRNAs involved in gene silencing by miRNA
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086593 snip1 Smad nuclear interacting protein protein_coding Danio_rerio
ENSDARG00000087528 snip1 Smad nuclear interacting protein protein_coding Danio_rerio
ENSMUSG00000050213 Snip1 Smad nuclear interacting protein 1 protein_coding Mus_musculus

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