C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smad nuclear interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050213 Snip1 10090 + 4:125066672-125074042 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052183 Snip1-001 125066672-125074042 protein_coding
  ENSMUST00000145733 Snip1-002 125066702-125071301 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052183ENSMUST00000145733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052183 4.491±1.78 5.146±0.77 6.411±0.58 5.586±2.45 5.176±2.06 5.992±0.64 2.001±0.68 4.263±0.71 5.786±2.33 5.933±0.44 2.034±0.32 8.259±1.44 9.354±3.14 9.201±2.86
ENSMUST00000145733 N/A 4.168±1.05 N/A 4.961±0.00 4.268±1.02 3.289±0.00 N/A N/A N/A N/A N/A 6.978±4.80 12.849±2.75 41.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JP CIL_0002JP_0003 CGP 4:125055338-125074042

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling
GO:0035196 ISS production of miRNAs involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086593 snip1 Smad nuclear interacting protein protein_coding Danio_rerio
ENSDARG00000087528 snip1 Smad nuclear interacting protein protein_coding Danio_rerio
ENSG00000163877 SNIP1 Smad nuclear interacting protein 1 protein_coding Homo_sapiens

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