C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 41A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163900 TMEM41A 9606 - 3:185476496-185499057 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296254 TMEM41A-005 185490997-185498987 protein_coding
  ENST00000382227 TMEM41A-006 185476496-185499035 nonsense_mediated_decay
  ENST00000421852 TMEM41A-001 185489601-185499057 protein_coding
  ENST00000467061 TMEM41A-004 185492276-185499057 retained_intron
  ENST00000467520 TMEM41A-008 185495228-185498722 processed_transcript
  ENST00000475480 TMEM41A-007 185480160-185498985 processed_transcript
  ENST00000484062 TMEM41A-009 185482671-185490027 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296254ENST00000421852ENST00000467061ENST00000484062
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296254 N/A N/A N/A N/A N/A N/A N/A N/A 6.474±0.00 N/A N/A N/A N/A N/A
ENST00000421852 5.150±0.00 4.884±0.00 1.980±0.00 4.062±0.00 3.551±0.76 3.876±0.00 2.656±0.00 7.117±0.00 5.966±0.00 4.479±0.00 2.169±0.99 18.376±10.95 4.568±0.81 5.735±0.32
ENST00000467061 N/A N/A N/A N/A 1.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484062 N/A N/A N/A N/A N/A 10.625±0.00 N/A N/A N/A N/A N/A 50.252±0.00 4.599±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056W CIL_00056W_0001 CGP 3:185190624-185489097
CIL_0006RB CIL_0006RB_0001 CGP 3:185282941-185499057
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0006RC CIL_0006RC_0001 CGP 3:185476496-185552613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026771 tmem41ab transmembrane protein 41ab protein_coding Danio_rerio
ENSDARG00000070028 tmem41aa transmembrane protein 41aa protein_coding Danio_rerio
ENSMUSG00000022856 Tmem41a transmembrane protein 41a protein_coding Mus_musculus

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