C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 208, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163946 FAM208A 9606 - 3:56620133-56683237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355628 FAM208A-003 56622859-56683237 protein_coding
  ENST00000431842 FAM208A-002 56620545-56664331 protein_coding
  ENST00000459993 FAM208A-001 56620133-56633972 retained_intron
  ENST00000461863 FAM208A-008 56627649-56629103 retained_intron
  ENST00000477406 FAM208A-009 56671352-56673673 retained_intron
  ENST00000478052 FAM208A-005 56660969-56668489 processed_transcript
  ENST00000485156 FAM208A-006 56623117-56627070 processed_transcript
  ENST00000487036 FAM208A-007 56624835-56628640 retained_intron
  ENST00000493960 FAM208A-004 56622738-56683017 protein_coding
  ENST00000614531 FAM208A-201 56622862-56647172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355628ENST00000431842ENST00000459993ENST00000485156ENST00000493960
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355628 N/A N/A 1.528±0.00 N/A 2.345±0.00 N/A N/A N/A 3.072±0.00 N/A N/A N/A N/A 4.700±0.00
ENST00000431842 N/A N/A N/A N/A 2.389±0.00 N/A 0.918±0.00 N/A N/A N/A N/A 1.578±0.00 N/A N/A
ENST00000459993 3.158±0.00 4.120±0.00 N/A 3.473±0.00 2.735±0.03 1.117±0.00 1.023±0.00 3.664±0.00 1.006±0.00 2.432±0.00 0.719±0.00 3.275±0.40 1.424±0.94 7.900±0.00
ENST00000485156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.785±0.00 18.839±0.00 96.211±0.00
ENST00000493960 N/A N/A 1.292±0.00 4.212±0.00 4.228±1.45 4.568±0.00 1.480±0.47 1.793±0.72 4.278±0.00 6.622±0.00 N/A 2.244±0.07 2.099±0.00 10.505±6.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UE CIL_0007UE_0001 VISTA 3:56468385-57070064

Gene Ontology
GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013346 fam208ab family with sequence similarity 208, member Ab protein_coding Danio_rerio
ENSDARG00000089893 CABZ01044611.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000040651 Fam208a family with sequence similarity 208, member A protein_coding Mus_musculus

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