C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007UE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1512 VISTA 9606 3:56468385-57070064
GeneTranscriptPositionBiotype
ENSG00000163946 (FAM208A)
family with sequence similarity 208, member A 		ENST00000355628 (FAM208A-003) 56622859-56683237 protein_coding
ENST00000431842 (FAM208A-002) 56620545-56664331 protein_coding
ENST00000459993 (FAM208A-001) 56620133-56633972 retained_intron
ENST00000461863 (FAM208A-008) 56627649-56629103 retained_intron
ENST00000477406 (FAM208A-009) 56671352-56673673 retained_intron
ENST00000478052 (FAM208A-005) 56660969-56668489 processed_transcript
ENST00000485156 (FAM208A-006) 56623117-56627070 processed_transcript
ENST00000487036 (FAM208A-007) 56624835-56628640 retained_intron
ENST00000493960 (FAM208A-004) 56622738-56683017 protein_coding
ENST00000614531 (FAM208A-201) 56622862-56647172 protein_coding
ENSG00000163947 (ARHGEF3)
Rho guanine nucleotide exchange factor (GEF) 3 		ENST00000296315 (ARHGEF3-001) 56727418-56801967 protein_coding
ENST00000338458 (ARHGEF3-002) 56727418-57079308 protein_coding
ENST00000413728 (ARHGEF3-003) 56727421-56775657 protein_coding
ENST00000465659 (ARHGEF3-004) 56728232-56801949 nonsense_mediated_decay
ENST00000468466 (ARHGEF3-011) 56773709-57079265 protein_coding
ENST00000468727 (ARHGEF3-008) 56751118-57079308 protein_coding
ENST00000473779 (ARHGEF3-010) 56751300-56977375 protein_coding
ENST00000477440 (ARHGEF3-015) 56755072-57078815 processed_transcript
ENST00000477833 (ARHGEF3-012) 56754981-57079329 nonsense_mediated_decay
ENST00000481422 (ARHGEF3-013) 56751349-56939909 processed_transcript
ENST00000486829 (ARHGEF3-009) 56773767-56977375 nonsense_mediated_decay
ENST00000495373 (ARHGEF3-006) 56731593-56801949 protein_coding
ENST00000496106 (ARHGEF3-007) 56728987-56916471 protein_coding
ENST00000497267 (ARHGEF3-005) 56729021-56775567 protein_coding
ENST00000498517 (ARHGEF3-014) 56753494-56939907 processed_transcript
ENSG00000180376 (CCDC66)
coiled-coil domain containing 66 		ENST00000326595 (CCDC66-002) 56557188-56621762 protein_coding
ENST00000341455 (CCDC66-005) 56557219-56621808 nonsense_mediated_decay
ENST00000394672 (CCDC66-001) 56557173-56621797 protein_coding
ENST00000422222 (CCDC66-008) 56557161-56617301 protein_coding
ENST00000422788 (CCDC66-010) 56557219-56565205 nonsense_mediated_decay
ENST00000434467 (CCDC66-003) 56557210-56570746 nonsense_mediated_decay
ENST00000439445 (CCDC66-009) 56557163-56564139 nonsense_mediated_decay
ENST00000442522 (CCDC66-004) 56557228-56570671 processed_transcript
ENST00000459746 (CCDC66-011) 56557191-56564125 processed_transcript
ENST00000460838 (CCDC66-021) 56557163-56566739 processed_transcript
ENST00000468108 (CCDC66-017) 56593712-56615417 retained_intron
ENST00000469966 (CCDC66-020) 56557707-56564156 processed_transcript
ENST00000471681 (CCDC66-015) 56557211-56621808 nonsense_mediated_decay
ENST00000472582 (CCDC66-022) 56557203-56566706 processed_transcript
ENST00000473322 (CCDC66-012) 56563516-56565177 retained_intron
ENST00000476142 (CCDC66-007) 56617101-56621762 retained_intron
ENST00000480884 (CCDC66-006) 56615869-56621818 retained_intron
ENST00000482673 (CCDC66-014) 56566661-56572910 retained_intron
ENST00000484441 (CCDC66-018) 56566951-56571379 retained_intron
ENST00000484623 (CCDC66-013) 56558845-56615153 processed_transcript
ENST00000487739 (CCDC66-019) 56558855-56561222 retained_intron
ENST00000494672 (CCDC66-016) 56566783-56593061 retained_intron
ENSG00000186451 (SPATA12)
spermatogenesis associated 12 		ENST00000334325 (SPATA12-001) 57060441-57075432 protein_coding
ENSG00000240198 (ARHGEF3-AS1)
ARHGEF3 antisense RNA 1 		ENST00000477246 (ARHGEF3-AS1-001) 56940040-56960854 antisense
ENST00000495939 (ARHGEF3-AS1-002) 56940076-56941048 antisense
CIL_0007UE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1512 VISTA 10090 14:27067008-27667960
GeneTranscriptPositionBiotype
ENSMUSG00000021895 (Arhgef3)
Rho guanine nucleotide exchange factor (GEF) 3 		ENSMUST00000049206 (Arhgef3-201) 27238039-27403904 protein_coding
ENSMUSG00000040640 (Erc2)
ELKS/RAB6-interacting/CAST family member 2 		ENSMUST00000090302 (Erc2-201) 27622442-28478537 protein_coding
ENSMUSG00000040651 (Fam208a)
family with sequence similarity 208, member A 		ENSMUST00000022450 (Fam208a-201) 27428847-27483552 protein_coding
ENSMUSG00000040717 (Il17rd)
interleukin 17 receptor D 		ENSMUST00000035336 (Il17rd-201) 27039001-27107286 protein_coding
ENSMUSG00000046753 (Ccdc66)
coiled-coil domain containing 66 		ENSMUST00000050480 (Ccdc66-201) 27482412-27508460 protein_coding
ENSMUSG00000088615 (Gm22485)
predicted gene, 22485 		ENSMUST00000157990 (Gm22485-201) 27489269-27489377 snRNA
ENSMUSG00000093034 (Gm23633)
predicted gene, 23633 		ENSMUST00000175293 (Gm23633-201) 27380732-27380850 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UE_0001ENSG00000163946ENST00000355628ENST00000431842ENST00000459993ENST00000485156ENST00000493960ENSG00000163947ENST00000296315ENST00000338458ENST00000413728ENST00000465659ENST00000495373ENST00000496106ENST00000497267ENSG00000180376ENST00000326595ENST00000341455ENST00000394672ENST00000484623ENSG00000186451ENST00000334325ENSG00000240198ENST00000477246ENST00000495939CIL_0007UE_0002ENSMUSG00000021895ENSMUST00000049206ENSMUSG00000040640ENSMUST00000090302ENSMUSG00000040651ENSMUST00000022450ENSMUSG00000040717ENSMUST00000035336ENSMUSG00000046753ENSMUST00000050480ENSMUSG00000088615ENSMUST00000157990ENSMUSG00000093034ENSMUST00000175293
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163946 ENST00000355628 N/A N/A 1.528±0.00 N/A 2.345±0.00 N/A N/A N/A 3.072±0.00 N/A N/A N/A N/A 4.700±0.00
ENST00000431842 N/A N/A N/A N/A 2.389±0.00 N/A 0.918±0.00 N/A N/A N/A N/A 1.578±0.00 N/A N/A
ENST00000459993 3.158±0.00 4.120±0.00 N/A 3.473±0.00 2.735±0.03 1.117±0.00 1.023±0.00 3.664±0.00 1.006±0.00 2.432±0.00 0.719±0.00 3.275±0.40 1.424±0.94 7.900±0.00
ENST00000461863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.785±0.00 18.839±0.00 96.211±0.00
ENST00000487036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493960 N/A N/A 1.292±0.00 4.212±0.00 4.228±1.45 4.568±0.00 1.480±0.47 1.793±0.72 4.278±0.00 6.622±0.00 N/A 2.244±0.07 2.099±0.00 10.505±6.80
ENST00000614531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163947 ENST00000296315 5.725±0.00 4.720±0.00 N/A 5.157±2.05 2.412±2.06 5.752±0.00 2.277±0.00 8.977±8.80 0.496±0.00 6.824±4.20 2.124±0.00 7.166±2.90 7.706±0.48 9.468±0.00
ENST00000338458 N/A 1.596±0.00 N/A N/A 0.509±0.00 1.106±0.34 0.535±0.00 N/A N/A N/A N/A 2.076±2.02 1.710±0.00 1.425±0.00
ENST00000413728 N/A N/A N/A 1.810±0.00 N/A 0.641±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465659 N/A N/A 1.510±0.00 N/A N/A 0.733±0.00 N/A 0.412±0.00 1.862±0.00 N/A N/A 1.901±0.98 7.270±0.00 7.323±0.00
ENST00000468466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A N/A
ENST00000496106 N/A N/A N/A N/A N/A 1.029±0.00 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000497267 N/A N/A N/A 1.741±0.00 N/A N/A N/A N/A 1.733±0.00 N/A N/A N/A N/A N/A
ENST00000498517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180376 ENST00000326595 N/A N/A 1.081±0.00 N/A N/A 2.318±0.00 N/A 3.145±0.00 N/A N/A N/A 2.299±0.00 N/A N/A
ENST00000341455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.307±0.00 N/A N/A N/A
ENST00000394672 N/A N/A N/A N/A N/A 2.252±0.00 1.004±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000422222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.699±0.00 N/A
ENST00000487739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186451 ENST00000334325 N/A 0.104±0.00 0.024±0.00 0.007±0.00 0.147±0.05 0.477±0.00 0.006±0.00 0.007±0.00 0.210±0.19 0.089±0.05 0.134±0.00 0.163±0.15 0.020±0.00 6.278±2.05
ENSG00000240198 ENST00000477246 N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.401±0.00
ENST00000495939 N/A 0.098±0.00 N/A N/A 0.158±0.00 N/A N/A 0.098±0.00 N/A N/A 0.042±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021895 ENSMUST00000049206 8.854±2.40 6.000±1.83 13.316±5.83 1.075±0.59 5.162±2.86 6.105±1.73 6.068±0.64 6.931±1.19 2.549±2.41 30.966±1.56 1.774±0.56 4.222±1.45 8.945±4.35 3.257±1.52
ENSMUSG00000040640 ENSMUST00000090302 0.107±0.07 0.308±0.15 0.150±0.08 10.414±3.99 0.022±0.01 0.080±0.05 0.057±0.00 0.731±0.37 0.366±0.35 0.295±0.00 0.015±0.00 0.159±0.07 0.168±0.14 0.323±0.08
ENSMUSG00000040651 ENSMUST00000022450 2.287±1.29 4.256±1.72 8.755±0.90 6.045±3.41 3.492±1.81 2.315±0.43 0.698±0.23 1.149±0.54 2.239±1.08 5.014±0.23 0.342±0.08 4.363±1.38 3.921±0.72 1.775±0.76
ENSMUSG00000040717 ENSMUST00000035336 3.540±1.75 1.332±0.07 2.977±0.03 1.371±0.80 2.392±0.53 1.728±0.28 0.943±0.13 1.773±0.48 0.106±0.03 6.303±0.33 0.538±0.13 6.034±2.04 0.979±0.52 0.513±0.44
ENSMUSG00000046753 ENSMUST00000050480 1.438±0.41 N/A 5.958±1.11 7.346±2.41 1.262±0.34 1.178±0.06 1.338±0.12 1.284±0.10 2.290±1.55 N/A 2.177±0.47 4.779±4.55 6.405±4.10 4.829±0.27
ENSMUSG00000088615 ENSMUST00000157990 N/A N/A N/A 16.076±0.00 N/A N/A N/A N/A 16.941±0.00 N/A N/A 63.183±23.74 34.788±0.00 17.640±0.00
ENSMUSG00000093034 ENSMUST00000175293 N/A N/A N/A N/A 1240.800±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading