C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164007 CLDN19 9606 - 1:42733093-42740254 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296387 CLDN19-001 42733093-42740254 protein_coding
  ENST00000372539 CLDN19-002 42734995-42740140 protein_coding
  ENST00000539749 CLDN19-201 42733093-42740254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296387ENST00000372539ENST00000539749
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296387 0.560±0.00 0.078±0.00 0.057±0.00 N/A 0.056±0.03 3.050±0.00 0.031±0.00 N/A 0.095±0.00 0.062±0.00 5.844±2.19 0.108±0.00
ENST00000372539 2.325±0.00 N/A N/A 0.077±0.00 N/A 4.523±0.00 N/A 0.052±0.00 0.030±0.00 0.016±0.00 22.549±9.23 N/A
ENST00000539749 N/A N/A N/A 0.010±0.00 N/A 2.440±0.00 N/A N/A N/A 0.026±0.00 4.850±0.00 0.092±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B1 CIL_0005B1_0002 CGP 1:42733093-42767084

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005923 ISS tight junction
GO:0007601 IEA visual perception
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0019227 IEA neuronal action potential propagation
GO:0030054 IEA cell junction
GO:0042802 ISS identical protein binding
GO:0043296 IDA apical junction complex
GO:0043297 IEA apical junction assembly
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044569 cldn19 claudin 19 protein_coding Danio_rerio
ENSMUSG00000066058 Cldn19 claudin 19 protein_coding Mus_musculus

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