C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372539 CLDN19-002 ENSG00000164007 9606 - 1:42734995-42740140 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLungMuscleOvaryPlacentaENST00000372539
Transcript ID Adipose Colon Kidney Lung Muscle Ovary Placenta
ENST00000372539 2.325±0.00 0.077±0.00 4.523±0.00 0.052±0.00 0.030±0.00 0.016±0.00 22.549±9.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B1 CIL_0005B1_0002 CGP 1:42733093-42767084

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005923 ISS tight junction
GO:0007601 IEA visual perception
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding
GO:0043296 IDA apical junction complex
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094823 Cldn19-002 protein_coding Mus_musculus 0 856
ENSMUST00000084309 Cldn19-001 protein_coding Mus_musculus 0 797

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